miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18941 5' -53.7 NC_004683.1 + 25524 0.66 0.825175
Target:  5'- aGCUGacgccGUGCCGcuGUggCUCGGCCu -3'
miRNA:   3'- aCGACacu--CGCGGCu-CAaaGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 45311 0.66 0.825175
Target:  5'- uUGCUGUcgcuaGAgGCGCUGAcgaUCUCGGCg -3'
miRNA:   3'- -ACGACA-----CU-CGCGGCUcaaAGAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 4493 0.66 0.815886
Target:  5'- -aCUGcGGGCGauuCGGGagUCUCGGCCu -3'
miRNA:   3'- acGACaCUCGCg--GCUCaaAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 39969 0.66 0.806402
Target:  5'- gGCUgGUGAcucGCGUCGAGg---UUGACCg -3'
miRNA:   3'- aCGA-CACU---CGCGGCUCaaagAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 34728 0.66 0.806402
Target:  5'- aGC-GUGAcGUGCCcuacGAGacgUUCUUGACCu -3'
miRNA:   3'- aCGaCACU-CGCGG----CUCa--AAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 50689 0.66 0.806402
Target:  5'- cUGCUGUG-GCGCuaCGAGg---UCGACg -3'
miRNA:   3'- -ACGACACuCGCG--GCUCaaagAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 9818 0.66 0.796733
Target:  5'- aGCUGgagGAucgGCGCCGAGccgaCUCGAa- -3'
miRNA:   3'- aCGACa--CU---CGCGGCUCaaa-GAGCUgg -5'
18941 5' -53.7 NC_004683.1 + 30993 0.66 0.794778
Target:  5'- aUGaCUGUGAGUGuuGAGggauucacgccaUUCU-GACCa -3'
miRNA:   3'- -AC-GACACUCGCggCUCa-----------AAGAgCUGG- -5'
18941 5' -53.7 NC_004683.1 + 17300 0.67 0.766723
Target:  5'- cGUUGUacggGGGCGCCGGGg---UCGGCa -3'
miRNA:   3'- aCGACA----CUCGCGGCUCaaagAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 5517 0.67 0.766723
Target:  5'- aGCUGgGA-CGCCGAGUUcgaggaagUCUCgGACg -3'
miRNA:   3'- aCGACaCUcGCGGCUCAA--------AGAG-CUGg -5'
18941 5' -53.7 NC_004683.1 + 20228 0.67 0.756423
Target:  5'- cGCUGgcgcagucGGUGCCGGGUaUCggcgCGAUCa -3'
miRNA:   3'- aCGACac------UCGCGGCUCAaAGa---GCUGG- -5'
18941 5' -53.7 NC_004683.1 + 39265 0.67 0.756423
Target:  5'- cGUUGUcGGCGuuGgAGUgugcCUCGGCCu -3'
miRNA:   3'- aCGACAcUCGCggC-UCAaa--GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 13860 0.67 0.745995
Target:  5'- gGCUGacUGGGCugaGCCGGGUUcgggUUCGGCg -3'
miRNA:   3'- aCGAC--ACUCG---CGGCUCAAa---GAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 39623 0.67 0.73545
Target:  5'- cGggGUGGGCGCCGccggGGUgg--CGACCc -3'
miRNA:   3'- aCgaCACUCGCGGC----UCAaagaGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 11192 0.67 0.724799
Target:  5'- gGCcugGUGAGCGauuaCGAGcaggcgUUCGACCu -3'
miRNA:   3'- aCGa--CACUCGCg---GCUCaaa---GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 50987 0.67 0.724799
Target:  5'- cGCcaa-GGCGCCGAGgggUUCUCGucuGCCc -3'
miRNA:   3'- aCGacacUCGCGGCUCa--AAGAGC---UGG- -5'
18941 5' -53.7 NC_004683.1 + 18473 0.68 0.714055
Target:  5'- gGCguagGUGGccgcacCGCCGAccUUCUCGGCCa -3'
miRNA:   3'- aCGa---CACUc-----GCGGCUcaAAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 12472 0.68 0.692332
Target:  5'- aGCUGcUGAGCGgUGGcGUUgccCUCGGCUu -3'
miRNA:   3'- aCGAC-ACUCGCgGCU-CAAa--GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 41262 0.69 0.659335
Target:  5'- gGCUGUGGGCGCCc-GUgcugaUCGccGCCg -3'
miRNA:   3'- aCGACACUCGCGGcuCAaag--AGC--UGG- -5'
18941 5' -53.7 NC_004683.1 + 24062 0.7 0.607279
Target:  5'- gGCgugGUGAucGCGCCGAGgggcacguagccgugCUCGACg -3'
miRNA:   3'- aCGa--CACU--CGCGGCUCaaa------------GAGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.