miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18941 5' -53.7 NC_004683.1 + 44976 1.12 0.000961
Target:  5'- cUGCUGUGAGCGCCGAGUUUCUCGACCu -3'
miRNA:   3'- -ACGACACUCGCGGCUCAAAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 26973 0.75 0.297531
Target:  5'- cGC-GUGAGCGCCGGGcaggC-CGGCCa -3'
miRNA:   3'- aCGaCACUCGCGGCUCaaa-GaGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 42859 0.73 0.406964
Target:  5'- gUGCUcGgcaaGGGUGCCGAGUUcgagaucCUCGACCc -3'
miRNA:   3'- -ACGA-Ca---CUCGCGGCUCAAa------GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 48382 0.72 0.465296
Target:  5'- cUGCcGUGcgauucaucAGCGCCGAGccacUUCUCgGACCg -3'
miRNA:   3'- -ACGaCAC---------UCGCGGCUCa---AAGAG-CUGG- -5'
18941 5' -53.7 NC_004683.1 + 28723 0.71 0.506501
Target:  5'- cGCc--GAGCGCCGccaagUCUCGGCCg -3'
miRNA:   3'- aCGacaCUCGCGGCucaa-AGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 47715 0.71 0.506501
Target:  5'- gUGCUGUGAcCGCCGAGUcgauguuguggUUC-CG-CCa -3'
miRNA:   3'- -ACGACACUcGCGGCUCA-----------AAGaGCuGG- -5'
18941 5' -53.7 NC_004683.1 + 20714 0.71 0.527683
Target:  5'- gGCUG-GAGUGCCGGGUg----GGCCa -3'
miRNA:   3'- aCGACaCUCGCGGCUCAaagagCUGG- -5'
18941 5' -53.7 NC_004683.1 + 43123 0.71 0.527683
Target:  5'- gGCUGUcGGGUGCUGAcgcaccUUUUCGGCCa -3'
miRNA:   3'- aCGACA-CUCGCGGCUca----AAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 293 0.7 0.603962
Target:  5'- aGCUGaccgcggccGGGCGCaugGAGacggUUCUCGGCCa -3'
miRNA:   3'- aCGACa--------CUCGCGg--CUCa---AAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 24062 0.7 0.607279
Target:  5'- gGCgugGUGAucGCGCCGAGgggcacguagccgugCUCGACg -3'
miRNA:   3'- aCGa--CACU--CGCGGCUCaaa------------GAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 41262 0.69 0.659335
Target:  5'- gGCUGUGGGCGCCc-GUgcugaUCGccGCCg -3'
miRNA:   3'- aCGACACUCGCGGcuCAaag--AGC--UGG- -5'
18941 5' -53.7 NC_004683.1 + 12472 0.68 0.692332
Target:  5'- aGCUGcUGAGCGgUGGcGUUgccCUCGGCUu -3'
miRNA:   3'- aCGAC-ACUCGCgGCU-CAAa--GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 18473 0.68 0.714055
Target:  5'- gGCguagGUGGccgcacCGCCGAccUUCUCGGCCa -3'
miRNA:   3'- aCGa---CACUc-----GCGGCUcaAAGAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 11192 0.67 0.724799
Target:  5'- gGCcugGUGAGCGauuaCGAGcaggcgUUCGACCu -3'
miRNA:   3'- aCGa--CACUCGCg---GCUCaaa---GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 50987 0.67 0.724799
Target:  5'- cGCcaa-GGCGCCGAGgggUUCUCGucuGCCc -3'
miRNA:   3'- aCGacacUCGCGGCUCa--AAGAGC---UGG- -5'
18941 5' -53.7 NC_004683.1 + 39623 0.67 0.73545
Target:  5'- cGggGUGGGCGCCGccggGGUgg--CGACCc -3'
miRNA:   3'- aCgaCACUCGCGGC----UCAaagaGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 13860 0.67 0.745995
Target:  5'- gGCUGacUGGGCugaGCCGGGUUcgggUUCGGCg -3'
miRNA:   3'- aCGAC--ACUCG---CGGCUCAAa---GAGCUGg -5'
18941 5' -53.7 NC_004683.1 + 20228 0.67 0.756423
Target:  5'- cGCUGgcgcagucGGUGCCGGGUaUCggcgCGAUCa -3'
miRNA:   3'- aCGACac------UCGCGGCUCAaAGa---GCUGG- -5'
18941 5' -53.7 NC_004683.1 + 39265 0.67 0.756423
Target:  5'- cGUUGUcGGCGuuGgAGUgugcCUCGGCCu -3'
miRNA:   3'- aCGACAcUCGCggC-UCAaa--GAGCUGG- -5'
18941 5' -53.7 NC_004683.1 + 5517 0.67 0.766723
Target:  5'- aGCUGgGA-CGCCGAGUUcgaggaagUCUCgGACg -3'
miRNA:   3'- aCGACaCUcGCGGCUCAA--------AGAG-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.