miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18943 5' -54.9 NC_004683.1 + 47330 0.66 0.697631
Target:  5'- ---aGGUC-GCCGUGGuguUCACcgcggucgguGGCCGCg -3'
miRNA:   3'- cuaaCUAGaCGGCACC---AGUG----------CCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 46504 0.67 0.675674
Target:  5'- --cUGGUUgcgGCaCGUGGUCgACGGgCACc -3'
miRNA:   3'- cuaACUAGa--CG-GCACCAG-UGCCgGUG- -5'
18943 5' -54.9 NC_004683.1 + 5788 0.67 0.664627
Target:  5'- --cUGGUUgcccuggccggUGCCGgucgugagGGUCACGGCCuCg -3'
miRNA:   3'- cuaACUAG-----------ACGGCa-------CCAGUGCCGGuG- -5'
18943 5' -54.9 NC_004683.1 + 44685 0.67 0.631343
Target:  5'- uGGUUGAUCUGCagGUGGUgcagucaugaCGCGcCCGCc -3'
miRNA:   3'- -CUAACUAGACGg-CACCA----------GUGCcGGUG- -5'
18943 5' -54.9 NC_004683.1 + 32509 0.68 0.598064
Target:  5'- --cUGAUCUcGgCGUGG-CuuGGCCACg -3'
miRNA:   3'- cuaACUAGA-CgGCACCaGugCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 52581 0.68 0.598064
Target:  5'- ---aGAUCcgGCgCGUGGUCAacCGGCC-Cg -3'
miRNA:   3'- cuaaCUAGa-CG-GCACCAGU--GCCGGuG- -5'
18943 5' -54.9 NC_004683.1 + 15900 0.69 0.554143
Target:  5'- cGUUGAguUCgGCaagGGUCGCGGUCACa -3'
miRNA:   3'- cUAACU--AGaCGgcaCCAGUGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 13599 0.69 0.554143
Target:  5'- ---aGAUCcagGCCcugGGUCGCGGUCAUg -3'
miRNA:   3'- cuaaCUAGa--CGGca-CCAGUGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 41711 0.69 0.554143
Target:  5'- ---aGAUC-GCgGUGGUCACcucGCCGCg -3'
miRNA:   3'- cuaaCUAGaCGgCACCAGUGc--CGGUG- -5'
18943 5' -54.9 NC_004683.1 + 53240 0.69 0.5433
Target:  5'- --gUGAUCUGCCG-GGUgaGCGGUguCg -3'
miRNA:   3'- cuaACUAGACGGCaCCAg-UGCCGguG- -5'
18943 5' -54.9 NC_004683.1 + 33936 0.69 0.532528
Target:  5'- -cUUGAUggcCUGCgGUGGUCcCGGCgACc -3'
miRNA:   3'- cuAACUA---GACGgCACCAGuGCCGgUG- -5'
18943 5' -54.9 NC_004683.1 + 52183 0.7 0.500704
Target:  5'- ---cGAUCUGCCGUGGUgGCucgaCACg -3'
miRNA:   3'- cuaaCUAGACGGCACCAgUGccg-GUG- -5'
18943 5' -54.9 NC_004683.1 + 46825 0.71 0.439797
Target:  5'- cGGUUGAUCauCCGcUGGcCACGGUCACc -3'
miRNA:   3'- -CUAACUAGacGGC-ACCaGUGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 40218 0.72 0.392407
Target:  5'- cGGUgGAUCgcaugcagauUGgCGaUGGUCGCGGCCGCg -3'
miRNA:   3'- -CUAaCUAG----------ACgGC-ACCAGUGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 14300 0.72 0.392407
Target:  5'- -------gUGCUGcgGGUCGCGGCCACg -3'
miRNA:   3'- cuaacuagACGGCa-CCAGUGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 20020 0.72 0.365613
Target:  5'- --gUGggCgGUgGUGGUCGCGGCCAg -3'
miRNA:   3'- cuaACuaGaCGgCACCAGUGCCGGUg -5'
18943 5' -54.9 NC_004683.1 + 55844 0.73 0.331899
Target:  5'- cGAgcGAUCUGgucggCGUGGUCuGCGGCCAUg -3'
miRNA:   3'- -CUaaCUAGACg----GCACCAG-UGCCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 39785 0.73 0.331899
Target:  5'- cGAUUGG-CUGCCGUagaccuuguuGGUgACaGGCCACa -3'
miRNA:   3'- -CUAACUaGACGGCA----------CCAgUG-CCGGUG- -5'
18943 5' -54.9 NC_004683.1 + 45375 1.08 0.001151
Target:  5'- gGAUUGAUCUGCCGUGGUCACGGCCACc -3'
miRNA:   3'- -CUAACUAGACGGCACCAGUGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.