miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18944 3' -62.4 NC_004683.1 + 47009 0.66 0.405465
Target:  5'- gCCGcuccaCCGUCGuGCACGUCGGCaGCgccucgcggGUGg -3'
miRNA:   3'- -GGCc----GGCGGC-CGUGUAGCCG-CGa--------CAC- -5'
18944 3' -62.4 NC_004683.1 + 17811 0.66 0.405465
Target:  5'- --cGCCGCUGGCGCA-CGGCGaCg--- -3'
miRNA:   3'- ggcCGGCGGCCGUGUaGCCGC-Gacac -5'
18944 3' -62.4 NC_004683.1 + 18309 0.66 0.405465
Target:  5'- cCCGGa-GaCgGGCGCAUCGGCaaccgaugacacGCUGUa -3'
miRNA:   3'- -GGCCggC-GgCCGUGUAGCCG------------CGACAc -5'
18944 3' -62.4 NC_004683.1 + 3341 0.66 0.388183
Target:  5'- uCCGGCUGCaucgGGCACGUCaugccggauaugGGCccggauguucgGUUGUGg -3'
miRNA:   3'- -GGCCGGCGg---CCGUGUAG------------CCG-----------CGACAC- -5'
18944 3' -62.4 NC_004683.1 + 42660 0.66 0.388183
Target:  5'- aCCGGCC-CCGacCGCcgCGGCGCg--- -3'
miRNA:   3'- -GGCCGGcGGCc-GUGuaGCCGCGacac -5'
18944 3' -62.4 NC_004683.1 + 18217 0.66 0.388183
Target:  5'- uCCGGCCGCCacGGCguGCGguaGGUGCcGg- -3'
miRNA:   3'- -GGCCGGCGG--CCG--UGUag-CCGCGaCac -5'
18944 3' -62.4 NC_004683.1 + 47215 0.66 0.388183
Target:  5'- aCCGGCCGCgCGaGaccuCGUCGGUGUcGUc -3'
miRNA:   3'- -GGCCGGCG-GC-Cgu--GUAGCCGCGaCAc -5'
18944 3' -62.4 NC_004683.1 + 40877 0.66 0.387332
Target:  5'- cUCGGCCucGCCGucggcgaGCGCGUCGGuCGCggcgGUc -3'
miRNA:   3'- -GGCCGG--CGGC-------CGUGUAGCC-GCGa---CAc -5'
18944 3' -62.4 NC_004683.1 + 10579 0.66 0.379725
Target:  5'- cUCGGCgcgaaGCCGGCccgcaGCAUCGcGCGCcuUGUc -3'
miRNA:   3'- -GGCCGg----CGGCCG-----UGUAGC-CGCG--ACAc -5'
18944 3' -62.4 NC_004683.1 + 41027 0.66 0.379725
Target:  5'- gUGGCCGaCgGGCaACggCGGCGCgGUc -3'
miRNA:   3'- gGCCGGC-GgCCG-UGuaGCCGCGaCAc -5'
18944 3' -62.4 NC_004683.1 + 16680 0.66 0.378049
Target:  5'- cCCGGCCGCCacaggucgacccGCACAUCGaCGCc--- -3'
miRNA:   3'- -GGCCGGCGGc-----------CGUGUAGCcGCGacac -5'
18944 3' -62.4 NC_004683.1 + 10048 0.66 0.371392
Target:  5'- gCCGaGCCGuUCGGcCGCggCGGCGaCUGg- -3'
miRNA:   3'- -GGC-CGGC-GGCC-GUGuaGCCGC-GACac -5'
18944 3' -62.4 NC_004683.1 + 25349 0.66 0.366452
Target:  5'- aCCGGCauucagGUCGGCuacgacgucaucgccGCAUucCGGCGCUGa- -3'
miRNA:   3'- -GGCCGg-----CGGCCG---------------UGUA--GCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 23068 0.66 0.363184
Target:  5'- cUCGGCgGCCuGGUGCucacCGGCGCgcucucGUGg -3'
miRNA:   3'- -GGCCGgCGG-CCGUGua--GCCGCGa-----CAC- -5'
18944 3' -62.4 NC_004683.1 + 21098 0.66 0.355103
Target:  5'- aCCGGuucaCCGUCGGCGaccaagguGUUGGUGCUGa- -3'
miRNA:   3'- -GGCC----GGCGGCCGUg-------UAGCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 23924 0.66 0.355103
Target:  5'- gCGGCCGaCGGCAuCGUCGG-GCcgGUc -3'
miRNA:   3'- gGCCGGCgGCCGU-GUAGCCgCGa-CAc -5'
18944 3' -62.4 NC_004683.1 + 42599 0.67 0.34715
Target:  5'- gCCGGUCGuCCGGCugGgguggUCGGCGa---- -3'
miRNA:   3'- -GGCCGGC-GGCCGugU-----AGCCGCgacac -5'
18944 3' -62.4 NC_004683.1 + 21818 0.67 0.34715
Target:  5'- aCCGGucugcCCGCgGGCugGguugaauccggCGGCGCUGc- -3'
miRNA:   3'- -GGCC-----GGCGgCCGugUa----------GCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 3301 0.67 0.34715
Target:  5'- cCUGGCCGaCGGCACAgcacaccCGUUGUGg -3'
miRNA:   3'- -GGCCGGCgGCCGUGUagcc---GCGACAC- -5'
18944 3' -62.4 NC_004683.1 + 28641 0.67 0.34715
Target:  5'- aCGGCCGagacuuggCGGCGC-UCGGCGUg--- -3'
miRNA:   3'- gGCCGGCg-------GCCGUGuAGCCGCGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.