miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18944 3' -62.4 NC_004683.1 + 45667 1.1 0.000208
Target:  5'- cCCGGCCGCCGGCACAUCGGCGCUGUGg -3'
miRNA:   3'- -GGCCGGCGGCCGUGUAGCCGCGACAC- -5'
18944 3' -62.4 NC_004683.1 + 20540 0.82 0.026174
Target:  5'- uCCGGCuuuccgcuCGCCGGC-CAUCGGCGCgGUGg -3'
miRNA:   3'- -GGCCG--------GCGGCCGuGUAGCCGCGaCAC- -5'
18944 3' -62.4 NC_004683.1 + 37850 0.76 0.076978
Target:  5'- gCGGCCGCCugGGUGuCGUCGGCGUgaagGUGa -3'
miRNA:   3'- gGCCGGCGG--CCGU-GUAGCCGCGa---CAC- -5'
18944 3' -62.4 NC_004683.1 + 44530 0.75 0.095603
Target:  5'- gUCGGgCGCCGGCGCggUGGCGCg--- -3'
miRNA:   3'- -GGCCgGCGGCCGUGuaGCCGCGacac -5'
18944 3' -62.4 NC_004683.1 + 34147 0.72 0.151716
Target:  5'- aCCGGCUGCCGGacCACAUCaugggccugcagcguGGCGCgagaaucugGUGu -3'
miRNA:   3'- -GGCCGGCGGCC--GUGUAG---------------CCGCGa--------CAC- -5'
18944 3' -62.4 NC_004683.1 + 48718 0.72 0.158166
Target:  5'- aCCGGCCGCC-GUGCAUUGGuCGCg--- -3'
miRNA:   3'- -GGCCGGCGGcCGUGUAGCC-GCGacac -5'
18944 3' -62.4 NC_004683.1 + 56660 0.72 0.162322
Target:  5'- uCCGGCCcauggucgagGCgGGCAa---GGCGCUGUGc -3'
miRNA:   3'- -GGCCGG----------CGgCCGUguagCCGCGACAC- -5'
18944 3' -62.4 NC_004683.1 + 23988 0.71 0.17093
Target:  5'- gUCGGCCGCCacGCcuACG-CGGCGCUGg- -3'
miRNA:   3'- -GGCCGGCGGc-CG--UGUaGCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 6875 0.71 0.179944
Target:  5'- aCGGCCGCuggaCGGCGCGcgaCGGCGCg--- -3'
miRNA:   3'- gGCCGGCG----GCCGUGUa--GCCGCGacac -5'
18944 3' -62.4 NC_004683.1 + 21575 0.71 0.189377
Target:  5'- gCGGUgGCgGGCGCGgcaugaucaccaUCGGCGCgugggGUGa -3'
miRNA:   3'- gGCCGgCGgCCGUGU------------AGCCGCGa----CAC- -5'
18944 3' -62.4 NC_004683.1 + 3105 0.71 0.189377
Target:  5'- gCGGCCggGUCGGC-CAUCGG-GUUGUGc -3'
miRNA:   3'- gGCCGG--CGGCCGuGUAGCCgCGACAC- -5'
18944 3' -62.4 NC_004683.1 + 7473 0.7 0.194255
Target:  5'- cCCGGCCGCCGaaucCAgGUCGaGCGCcuccggGUGc -3'
miRNA:   3'- -GGCCGGCGGCc---GUgUAGC-CGCGa-----CAC- -5'
18944 3' -62.4 NC_004683.1 + 20221 0.7 0.194255
Target:  5'- uUCGGaUCGCUGGCGCAgUCGGUGCcggGUa -3'
miRNA:   3'- -GGCC-GGCGGCCGUGU-AGCCGCGa--CAc -5'
18944 3' -62.4 NC_004683.1 + 28833 0.7 0.20434
Target:  5'- aCUGaGCCGuuGGCACAgacccucaUCGuGCGCcGUGa -3'
miRNA:   3'- -GGC-CGGCggCCGUGU--------AGC-CGCGaCAC- -5'
18944 3' -62.4 NC_004683.1 + 53663 0.69 0.231552
Target:  5'- gCGGCCGgCGGUGCGgcCGGCGuCUGc- -3'
miRNA:   3'- gGCCGGCgGCCGUGUa-GCCGC-GACac -5'
18944 3' -62.4 NC_004683.1 + 29326 0.69 0.235596
Target:  5'- gCGGUgucgaaggCGCCGGCGCAcuucUCGGCGUuugucgcgaguuucUGUGc -3'
miRNA:   3'- gGCCG--------GCGGCCGUGU----AGCCGCG--------------ACAC- -5'
18944 3' -62.4 NC_004683.1 + 21256 0.69 0.237348
Target:  5'- gCCGGCCuGuUUGGCACcgaccucgguAUCGGUGCUGa- -3'
miRNA:   3'- -GGCCGG-C-GGCCGUG----------UAGCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 40962 0.69 0.243265
Target:  5'- gUCGGCCacgccgaccugGCCGcGCGCAUCGcCGCUGc- -3'
miRNA:   3'- -GGCCGG-----------CGGC-CGUGUAGCcGCGACac -5'
18944 3' -62.4 NC_004683.1 + 13116 0.69 0.243265
Target:  5'- gCGGCUGCCcggaGGgGCAUCGGCGggaccgGUGc -3'
miRNA:   3'- gGCCGGCGG----CCgUGUAGCCGCga----CAC- -5'
18944 3' -62.4 NC_004683.1 + 3374 0.69 0.249304
Target:  5'- gCUGuGCCGUCGGCcagGCGUCGGCGggcCUGc- -3'
miRNA:   3'- -GGC-CGGCGGCCG---UGUAGCCGC---GACac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.