miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18944 3' -62.4 NC_004683.1 + 6129 0.67 0.344789
Target:  5'- gCCGGCCcaacgggucgcgcgGCUGGUucgcguacuaccGCAUgGGCGCcgaUGUGg -3'
miRNA:   3'- -GGCCGG--------------CGGCCG------------UGUAgCCGCG---ACAC- -5'
18944 3' -62.4 NC_004683.1 + 7403 0.67 0.339325
Target:  5'- uUGGCUGCCaGCACcgCcgcgguugggGGCGCgGUGa -3'
miRNA:   3'- gGCCGGCGGcCGUGuaG----------CCGCGaCAC- -5'
18944 3' -62.4 NC_004683.1 + 13004 0.67 0.334691
Target:  5'- gCGGCCGUCGaGCAgGUUGacgagauccucgaccGCGCUGg- -3'
miRNA:   3'- gGCCGGCGGC-CGUgUAGC---------------CGCGACac -5'
18944 3' -62.4 NC_004683.1 + 44635 0.67 0.334691
Target:  5'- gCCGGCCGaauCGGCGaggaacuugaaccaAUCGGCGUcguUGUa -3'
miRNA:   3'- -GGCCGGCg--GCCGUg-------------UAGCCGCG---ACAc -5'
18944 3' -62.4 NC_004683.1 + 25132 0.67 0.331628
Target:  5'- cCUGGCCGCCGuCAC--CGGUGCggGUa -3'
miRNA:   3'- -GGCCGGCGGCcGUGuaGCCGCGa-CAc -5'
18944 3' -62.4 NC_004683.1 + 41177 0.67 0.324061
Target:  5'- cCCGGCCG-UGGCAg--CGGCGCgGg- -3'
miRNA:   3'- -GGCCGGCgGCCGUguaGCCGCGaCac -5'
18944 3' -62.4 NC_004683.1 + 30755 0.67 0.324061
Target:  5'- aCGGCCGCugucgaccgcacCGGCGCAccgUCGGCuGCg--- -3'
miRNA:   3'- gGCCGGCG------------GCCGUGU---AGCCG-CGacac -5'
18944 3' -62.4 NC_004683.1 + 8182 0.67 0.324061
Target:  5'- gCGGCCaaGCaGGgGCAUCGGCgaauGCUGUu -3'
miRNA:   3'- gGCCGG--CGgCCgUGUAGCCG----CGACAc -5'
18944 3' -62.4 NC_004683.1 + 44431 0.67 0.322563
Target:  5'- gUCGGCCGUCGGCuugacggucgacgGCAgcgCGaGCGCcugcgacUGUGa -3'
miRNA:   3'- -GGCCGGCGGCCG-------------UGUa--GC-CGCG-------ACAC- -5'
18944 3' -62.4 NC_004683.1 + 21698 0.67 0.316623
Target:  5'- -gGGUgGUCGGUGCGggUGGCGCUGg- -3'
miRNA:   3'- ggCCGgCGGCCGUGUa-GCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 13716 0.67 0.309314
Target:  5'- uCCGGUuuCGCCGGUGCG-CGGCcugcGCUGc- -3'
miRNA:   3'- -GGCCG--GCGGCCGUGUaGCCG----CGACac -5'
18944 3' -62.4 NC_004683.1 + 45565 0.68 0.302135
Target:  5'- gCCGGUCGgUgcggGGCGCGUCGcGCGCgagaaGUGc -3'
miRNA:   3'- -GGCCGGCgG----CCGUGUAGC-CGCGa----CAC- -5'
18944 3' -62.4 NC_004683.1 + 12220 0.68 0.301424
Target:  5'- uUGGCCGaauCGGCccugccuGCGUCGGCgaccugcuGCUGUGc -3'
miRNA:   3'- gGCCGGCg--GCCG-------UGUAGCCG--------CGACAC- -5'
18944 3' -62.4 NC_004683.1 + 21957 0.68 0.300006
Target:  5'- gCGGCCGCCgaguucaccggccaGGCGgGU-GGUGCUGg- -3'
miRNA:   3'- gGCCGGCGG--------------CCGUgUAgCCGCGACac -5'
18944 3' -62.4 NC_004683.1 + 28705 0.68 0.295085
Target:  5'- cUCGGCCGUCGGC-CGccaaaccuUCGGCGUcGa- -3'
miRNA:   3'- -GGCCGGCGGCCGuGU--------AGCCGCGaCac -5'
18944 3' -62.4 NC_004683.1 + 46373 0.68 0.295085
Target:  5'- gCCGcGUCaGCCGGUcaACAUCGGgaCGCUGg- -3'
miRNA:   3'- -GGC-CGG-CGGCCG--UGUAGCC--GCGACac -5'
18944 3' -62.4 NC_004683.1 + 2962 0.68 0.295085
Target:  5'- aCUGGCCaGCgGGUcagGgAUCGGCGCgaaGUGc -3'
miRNA:   3'- -GGCCGG-CGgCCG---UgUAGCCGCGa--CAC- -5'
18944 3' -62.4 NC_004683.1 + 24888 0.68 0.295085
Target:  5'- aCCGGCauCGCCcGCAagaccCGGCcGCUGUGg -3'
miRNA:   3'- -GGCCG--GCGGcCGUgua--GCCG-CGACAC- -5'
18944 3' -62.4 NC_004683.1 + 12789 0.68 0.295085
Target:  5'- cCCGgcgggauacGCCGCUGGCGgAUacccgggcgaugCGGCGCUGcUGg -3'
miRNA:   3'- -GGC---------CGGCGGCCGUgUA------------GCCGCGAC-AC- -5'
18944 3' -62.4 NC_004683.1 + 26139 0.68 0.288163
Target:  5'- aUCGGguaUCGCCGGCGCggCGGUcucGCUGa- -3'
miRNA:   3'- -GGCC---GGCGGCCGUGuaGCCG---CGACac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.