miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18945 3' -56.8 NC_004683.1 + 45805 1.11 0.000621
Target:  5'- gAGGUGCGCGUCGCGUCGAACCACUGGg -3'
miRNA:   3'- -UCCACGCGCAGCGCAGCUUGGUGACC- -5'
18945 3' -56.8 NC_004683.1 + 25236 0.66 0.698267
Target:  5'- cGGUGCGCGgCGUG-CuGACCaacaucccgcaGCUGGu -3'
miRNA:   3'- uCCACGCGCaGCGCaGcUUGG-----------UGACC- -5'
18945 3' -56.8 NC_004683.1 + 51117 0.66 0.677037
Target:  5'- cGGG-GCGCGgccggCGCGaaGGGCCgcaaggccgACUGGa -3'
miRNA:   3'- -UCCaCGCGCa----GCGCagCUUGG---------UGACC- -5'
18945 3' -56.8 NC_004683.1 + 22192 0.66 0.666357
Target:  5'- cGGGuUGCGCGggGCGggcgaCGAGCCGCc-- -3'
miRNA:   3'- -UCC-ACGCGCagCGCa----GCUUGGUGacc -5'
18945 3' -56.8 NC_004683.1 + 40254 0.66 0.654574
Target:  5'- cAGGcGCGCGUCGaugaguuggaGUCGGaacucgacgaacuGCgCGCUGGc -3'
miRNA:   3'- -UCCaCGCGCAGCg---------CAGCU-------------UG-GUGACC- -5'
18945 3' -56.8 NC_004683.1 + 48810 0.66 0.644915
Target:  5'- uGGUaCGCGaugguUCGCGUCGGcaagaaACgCGCUGGc -3'
miRNA:   3'- uCCAcGCGC-----AGCGCAGCU------UG-GUGACC- -5'
18945 3' -56.8 NC_004683.1 + 21705 0.66 0.644915
Target:  5'- cGGUGCGgGUgGCGcUGGcagcGCCGCcGGa -3'
miRNA:   3'- uCCACGCgCAgCGCaGCU----UGGUGaCC- -5'
18945 3' -56.8 NC_004683.1 + 2746 0.67 0.61269
Target:  5'- uGGUGCGCGgcggcCGCGgCGAGCUcgGCggcGGc -3'
miRNA:   3'- uCCACGCGCa----GCGCaGCUUGG--UGa--CC- -5'
18945 3' -56.8 NC_004683.1 + 47710 0.67 0.601969
Target:  5'- gGGGUGUGCuGUgacCGCcgaGUCGAugUugUGGu -3'
miRNA:   3'- -UCCACGCG-CA---GCG---CAGCUugGugACC- -5'
18945 3' -56.8 NC_004683.1 + 35820 0.71 0.392774
Target:  5'- cAGGcucagGCGCGUCGUG-CGGAUggaaCGCUGGc -3'
miRNA:   3'- -UCCa----CGCGCAGCGCaGCUUG----GUGACC- -5'
18945 3' -56.8 NC_004683.1 + 3589 0.69 0.477352
Target:  5'- cGGcGUGUccGCGUCgGCGUCGAgcgauacaccgACCAgUGGa -3'
miRNA:   3'- -UC-CACG--CGCAG-CGCAGCU-----------UGGUgACC- -5'
18945 3' -56.8 NC_004683.1 + 381 0.69 0.516708
Target:  5'- cGGUGCgggccugGCGUCGCuGUCGAAagaGCUGcGg -3'
miRNA:   3'- uCCACG-------CGCAGCG-CAGCUUgg-UGAC-C- -5'
18945 3' -56.8 NC_004683.1 + 6139 0.68 0.538435
Target:  5'- cGGGUcGCGCGgcugguUCGCGUacuACCGCaUGGg -3'
miRNA:   3'- -UCCA-CGCGC------AGCGCAgcuUGGUG-ACC- -5'
18945 3' -56.8 NC_004683.1 + 26099 0.68 0.548891
Target:  5'- cAGGUGCGCGagugaaCGCGUgGGGCC-C-GGc -3'
miRNA:   3'- -UCCACGCGCa-----GCGCAgCUUGGuGaCC- -5'
18945 3' -56.8 NC_004683.1 + 28586 0.68 0.559411
Target:  5'- gGGGgagGCGggGUGUCGGACCgGCUGGa -3'
miRNA:   3'- -UCCacgCGCagCGCAGCUUGG-UGACC- -5'
18945 3' -56.8 NC_004683.1 + 21840 0.66 0.698267
Target:  5'- cGGUGgcCGCGgu-CGUUGAACCACcGGu -3'
miRNA:   3'- uCCAC--GCGCagcGCAGCUUGGUGaCC- -5'
18945 3' -56.8 NC_004683.1 + 46783 0.71 0.366821
Target:  5'- -aGUGCuCGUCGCGUCGGugcGCCACg-- -3'
miRNA:   3'- ucCACGcGCAGCGCAGCU---UGGUGacc -5'
18945 3' -56.8 NC_004683.1 + 44368 0.71 0.37534
Target:  5'- cGGGcgaucgucgGCGCGgaucgcCGCGUCGAGCCGCg-- -3'
miRNA:   3'- -UCCa--------CGCGCa-----GCGCAGCUUGGUGacc -5'
18945 3' -56.8 NC_004683.1 + 22790 0.69 0.477352
Target:  5'- cGGUGC-CGacgCGCGUCGAACCGg--- -3'
miRNA:   3'- uCCACGcGCa--GCGCAGCUUGGUgacc -5'
18945 3' -56.8 NC_004683.1 + 45554 0.69 0.507504
Target:  5'- cGGG-GCGCGUCGCGcgCGAgaaguGCUGCggcGGu -3'
miRNA:   3'- -UCCaCGCGCAGCGCa-GCU-----UGGUGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.