miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18945 5' -50.5 NC_004683.1 + 7608 0.66 0.948862
Target:  5'- -cCGAGACGC-CGAacuucucgaACGggUUcCCCa -3'
miRNA:   3'- caGCUCUGCGuGUUg--------UGCuuAGuGGG- -5'
18945 5' -50.5 NC_004683.1 + 43916 0.66 0.948862
Target:  5'- cUCGAGACcgaGCGCGGC-CGAGgucagcagcgCACCg -3'
miRNA:   3'- cAGCUCUG---CGUGUUGuGCUUa---------GUGGg -5'
18945 5' -50.5 NC_004683.1 + 21211 0.66 0.948862
Target:  5'- uUCGGGACcaGCAGCGCGGcaucagCACCa -3'
miRNA:   3'- cAGCUCUGcgUGUUGUGCUua----GUGGg -5'
18945 5' -50.5 NC_004683.1 + 4407 0.66 0.944066
Target:  5'- -aUGAGGC-CGaGACuccCGAAUCGCCCg -3'
miRNA:   3'- caGCUCUGcGUgUUGu--GCUUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 56670 0.66 0.944066
Target:  5'- gGUCGAGGCGgGCAAgGCGcugUGCUg -3'
miRNA:   3'- -CAGCUCUGCgUGUUgUGCuuaGUGGg -5'
18945 5' -50.5 NC_004683.1 + 56250 0.66 0.943571
Target:  5'- aUCGAGaacgcgcuacagcGCGCAgGACACGuacaCGCCUc -3'
miRNA:   3'- cAGCUC-------------UGCGUgUUGUGCuua-GUGGG- -5'
18945 5' -50.5 NC_004683.1 + 50307 0.66 0.942068
Target:  5'- uUCgGGGACGCuucaugaGCGACcCGAAgauccgccugcuguUCACCCg -3'
miRNA:   3'- cAG-CUCUGCG-------UGUUGuGCUU--------------AGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 49707 0.66 0.938985
Target:  5'- cGUCGucaacGACccagcgaucguGCACGAagGCGAGUUGCCCg -3'
miRNA:   3'- -CAGCu----CUG-----------CGUGUUg-UGCUUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 52539 0.66 0.933616
Target:  5'- cGUgGuGAuguCGCGCGGCACGGGagCACCg -3'
miRNA:   3'- -CAgCuCU---GCGUGUUGUGCUUa-GUGGg -5'
18945 5' -50.5 NC_004683.1 + 22157 0.66 0.933616
Target:  5'- --gGGGAUGC-CGAUACGuggUACCCg -3'
miRNA:   3'- cagCUCUGCGuGUUGUGCuuaGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 44531 0.66 0.927959
Target:  5'- cGUCG-GGCGC-CGGCGCGGuggCGCgCu -3'
miRNA:   3'- -CAGCuCUGCGuGUUGUGCUua-GUGgG- -5'
18945 5' -50.5 NC_004683.1 + 37795 0.66 0.927959
Target:  5'- -gCGAGugGaagggGCAGCGCGcgguuGUCGCCa -3'
miRNA:   3'- caGCUCugCg----UGUUGUGCu----UAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 26706 0.67 0.922013
Target:  5'- cGUCGAGuGCGCcgGCGGCAUcGcgCACCg -3'
miRNA:   3'- -CAGCUC-UGCG--UGUUGUGcUuaGUGGg -5'
18945 5' -50.5 NC_004683.1 + 46701 0.67 0.922013
Target:  5'- -aCGuGGCGCAcCGACGCGAcgagCACUg -3'
miRNA:   3'- caGCuCUGCGU-GUUGUGCUua--GUGGg -5'
18945 5' -50.5 NC_004683.1 + 17878 0.67 0.922013
Target:  5'- --gGGGACGcCGCAGCGCGuucaGCUCa -3'
miRNA:   3'- cagCUCUGC-GUGUUGUGCuuagUGGG- -5'
18945 5' -50.5 NC_004683.1 + 10385 0.67 0.915777
Target:  5'- cGUCGAG-CGUcgguuCAACGgGAAUCgggauACCCa -3'
miRNA:   3'- -CAGCUCuGCGu----GUUGUgCUUAG-----UGGG- -5'
18945 5' -50.5 NC_004683.1 + 52043 0.67 0.915777
Target:  5'- cUCGAGGCGCGuCA--GCGGAUcCACUg -3'
miRNA:   3'- cAGCUCUGCGU-GUugUGCUUA-GUGGg -5'
18945 5' -50.5 NC_004683.1 + 32547 0.67 0.909253
Target:  5'- -gCGGGACGCugAugcaucucCGCGGggUGCCCa -3'
miRNA:   3'- caGCUCUGCGugUu-------GUGCUuaGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 40411 0.67 0.909253
Target:  5'- cGUCGAGAuacuCGCuCAu--CGggUCACCg -3'
miRNA:   3'- -CAGCUCU----GCGuGUuguGCuuAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 47457 0.67 0.909253
Target:  5'- gGUCGGGAUGCACGugguaaaccuGCAUGcccuuGUCGCggCCa -3'
miRNA:   3'- -CAGCUCUGCGUGU----------UGUGCu----UAGUG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.