miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18945 5' -50.5 NC_004683.1 + 45840 1.12 0.002229
Target:  5'- cGUCGAGACGCACAACACGAAUCACCCc -3'
miRNA:   3'- -CAGCUCUGCGUGUUGUGCUUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 27288 0.83 0.192381
Target:  5'- aUCGAGACGCGcCAGCGCGGcagucAUCGCCg -3'
miRNA:   3'- cAGCUCUGCGU-GUUGUGCU-----UAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 42540 0.8 0.286951
Target:  5'- -aCGAGugGCGCcGCGCGAcgCACaCCa -3'
miRNA:   3'- caGCUCugCGUGuUGUGCUuaGUG-GG- -5'
18945 5' -50.5 NC_004683.1 + 52443 0.78 0.341478
Target:  5'- -gCGAGACGCGCGgugcucccgugccGCGCGAcAUCACCa -3'
miRNA:   3'- caGCUCUGCGUGU-------------UGUGCU-UAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 49387 0.77 0.424191
Target:  5'- aGUCGGGGCGguCAGcCACGggUCAguUCCu -3'
miRNA:   3'- -CAGCUCUGCguGUU-GUGCuuAGU--GGG- -5'
18945 5' -50.5 NC_004683.1 + 6479 0.77 0.424191
Target:  5'- cGUCGAgGACGC-CAGCGCcgagccGggUCACCUg -3'
miRNA:   3'- -CAGCU-CUGCGuGUUGUG------CuuAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 37008 0.75 0.484845
Target:  5'- cGUCGAG-CGCugAAUcCGcGUCGCCCu -3'
miRNA:   3'- -CAGCUCuGCGugUUGuGCuUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 38426 0.74 0.538377
Target:  5'- gGUCGcGGugGuCACAACugGGAcgggCACCCu -3'
miRNA:   3'- -CAGC-UCugC-GUGUUGugCUUa---GUGGG- -5'
18945 5' -50.5 NC_004683.1 + 1096 0.74 0.579254
Target:  5'- -gCGcGugGCGCAGCGCGAaccccucgucgaggAUCACCUu -3'
miRNA:   3'- caGCuCugCGUGUUGUGCU--------------UAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 4375 0.74 0.582602
Target:  5'- -gCGAGACGCcaGCGACgACGAGUC-CCa -3'
miRNA:   3'- caGCUCUGCG--UGUUG-UGCUUAGuGGg -5'
18945 5' -50.5 NC_004683.1 + 12906 0.73 0.593787
Target:  5'- -cCGGGACGUuggccaGCAGCGcCGcAUCGCCCg -3'
miRNA:   3'- caGCUCUGCG------UGUUGU-GCuUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 48268 0.73 0.627509
Target:  5'- -gCGAGugGCuGCGcaGCGAAUCACCa -3'
miRNA:   3'- caGCUCugCG-UGUugUGCUUAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 51190 0.72 0.650028
Target:  5'- -cCGAGAacgcgcccCGCACgAGCGCGAG-CGCCCc -3'
miRNA:   3'- caGCUCU--------GCGUG-UUGUGCUUaGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 33418 0.72 0.661267
Target:  5'- --aGAGGCcCGCGACGCGc-UCGCCCa -3'
miRNA:   3'- cagCUCUGcGUGUUGUGCuuAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 6674 0.72 0.682534
Target:  5'- -cCGcGGCGCGCcgcugguguggcuGGCACGuGUCGCCCg -3'
miRNA:   3'- caGCuCUGCGUG-------------UUGUGCuUAGUGGG- -5'
18945 5' -50.5 NC_004683.1 + 54619 0.72 0.683649
Target:  5'- cGUCGcGGGCGCAUAGCGC---UCGCCg -3'
miRNA:   3'- -CAGC-UCUGCGUGUUGUGcuuAGUGGg -5'
18945 5' -50.5 NC_004683.1 + 6444 0.72 0.683649
Target:  5'- -cCGGGGCGCACcACGCGGggCACg- -3'
miRNA:   3'- caGCUCUGCGUGuUGUGCUuaGUGgg -5'
18945 5' -50.5 NC_004683.1 + 51116 0.72 0.694768
Target:  5'- -gCGGGGCGCGgcCGGCGCGAAggGCCg -3'
miRNA:   3'- caGCUCUGCGU--GUUGUGCUUagUGGg -5'
18945 5' -50.5 NC_004683.1 + 2773 0.71 0.705824
Target:  5'- aUCGGGcCGCAUccGCACGAAcUCACCg -3'
miRNA:   3'- cAGCUCuGCGUGu-UGUGCUU-AGUGGg -5'
18945 5' -50.5 NC_004683.1 + 2038 0.71 0.727697
Target:  5'- gGUCGuGACgGCACAACAgGAAUCGg-- -3'
miRNA:   3'- -CAGCuCUG-CGUGUUGUgCUUAGUggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.