miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18947 3' -54.9 NC_004683.1 + 12500 0.66 0.740675
Target:  5'- ---cAUCGUgacCUGCUGGCgCGCGGUgGCc -3'
miRNA:   3'- caacUAGUA---GGCGACCG-GUGCCAgUG- -5'
18947 3' -54.9 NC_004683.1 + 8382 0.66 0.740675
Target:  5'- -gUGAUCGgccCCGCgcgGGCCGCGaUC-Ca -3'
miRNA:   3'- caACUAGUa--GGCGa--CCGGUGCcAGuG- -5'
18947 3' -54.9 NC_004683.1 + 6657 0.66 0.740675
Target:  5'- ---cAUCGacgCCguGCUGGCCGCGG-CGCg -3'
miRNA:   3'- caacUAGUa--GG--CGACCGGUGCCaGUG- -5'
18947 3' -54.9 NC_004683.1 + 3233 0.66 0.718252
Target:  5'- -gUGAUCGUCgGacuguccgagggcCUGGCCGCGG-CGa -3'
miRNA:   3'- caACUAGUAGgC-------------GACCGGUGCCaGUg -5'
18947 3' -54.9 NC_004683.1 + 12622 0.66 0.708518
Target:  5'- --cGAUUcgUCGCcagccUGGCCGCGG-CGCc -3'
miRNA:   3'- caaCUAGuaGGCG-----ACCGGUGCCaGUG- -5'
18947 3' -54.9 NC_004683.1 + 13892 0.66 0.704172
Target:  5'- gGUUGAUCGgcuggccgggcugCUGCUGGCC-CGGcUgACu -3'
miRNA:   3'- -CAACUAGUa------------GGCGACCGGuGCC-AgUG- -5'
18947 3' -54.9 NC_004683.1 + 51684 0.66 0.697631
Target:  5'- cUUGAUCGcgucgagcUCgGcCUGGCgACGGUCGa -3'
miRNA:   3'- cAACUAGU--------AGgC-GACCGgUGCCAGUg -5'
18947 3' -54.9 NC_004683.1 + 17799 0.66 0.697631
Target:  5'- --aGGUCAacgugacgCCGCUGGCgCACGG-CGa -3'
miRNA:   3'- caaCUAGUa-------GGCGACCG-GUGCCaGUg -5'
18947 3' -54.9 NC_004683.1 + 45377 0.66 0.697631
Target:  5'- aUUGAUCugCCG-UGGUCACGGcCACc -3'
miRNA:   3'- cAACUAGuaGGCgACCGGUGCCaGUG- -5'
18947 3' -54.9 NC_004683.1 + 54689 0.67 0.686679
Target:  5'- --cGAUCGUCCGgUcGGCgAC-GUCGCg -3'
miRNA:   3'- caaCUAGUAGGCgA-CCGgUGcCAGUG- -5'
18947 3' -54.9 NC_004683.1 + 20976 0.67 0.664627
Target:  5'- --cGGUCAUCUGaugccCUGGUCACcGUCGCc -3'
miRNA:   3'- caaCUAGUAGGC-----GACCGGUGcCAGUG- -5'
18947 3' -54.9 NC_004683.1 + 372 0.67 0.664627
Target:  5'- -----cCAUgCGCccGGCCGCGGUCAg -3'
miRNA:   3'- caacuaGUAgGCGa-CCGGUGCCAGUg -5'
18947 3' -54.9 NC_004683.1 + 189 0.68 0.60914
Target:  5'- --aGGUCGcgCCGCagaaccUGGCCugGGUCu- -3'
miRNA:   3'- caaCUAGUa-GGCG------ACCGGugCCAGug -5'
18947 3' -54.9 NC_004683.1 + 53631 0.69 0.521834
Target:  5'- --cGAUCAggcccgCCGCgaccUGGCCGCGGcugaggcugcacUCACa -3'
miRNA:   3'- caaCUAGUa-----GGCG----ACCGGUGCC------------AGUG- -5'
18947 3' -54.9 NC_004683.1 + 45481 0.7 0.500704
Target:  5'- -----gCAUCCGCUGGuUgGCGGUCAg -3'
miRNA:   3'- caacuaGUAGGCGACC-GgUGCCAGUg -5'
18947 3' -54.9 NC_004683.1 + 1012 0.7 0.500704
Target:  5'- --aGAUCAcgCGCUGGCCAucCGGgCACg -3'
miRNA:   3'- caaCUAGUagGCGACCGGU--GCCaGUG- -5'
18947 3' -54.9 NC_004683.1 + 24359 0.7 0.490281
Target:  5'- ---cGUCG-CCGCaGGCCacGCGGUCGCg -3'
miRNA:   3'- caacUAGUaGGCGaCCGG--UGCCAGUG- -5'
18947 3' -54.9 NC_004683.1 + 15900 0.72 0.356967
Target:  5'- cGUUGAgu-UCgGCaagGGUCGCGGUCACa -3'
miRNA:   3'- -CAACUaguAGgCGa--CCGGUGCCAGUG- -5'
18947 3' -54.9 NC_004683.1 + 25552 0.79 0.146286
Target:  5'- -cUGGUCG-CCGCccUGGCCGCGGUCGg -3'
miRNA:   3'- caACUAGUaGGCG--ACCGGUGCCAGUg -5'
18947 3' -54.9 NC_004683.1 + 46826 1.08 0.001151
Target:  5'- gGUUGAUCAUCCGCUGGCCACGGUCACc -3'
miRNA:   3'- -CAACUAGUAGGCGACCGGUGCCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.