miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18947 5' -56.5 NC_004683.1 + 12645 0.66 0.708536
Target:  5'- gGCGcCGCugCugGGCCcgcuGUcGGCGAUCa -3'
miRNA:   3'- -CGU-GUGugGugCCGGac--CA-CUGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 6856 0.66 0.708536
Target:  5'- gGCACGCuuaccaagccCUACGGCCgcugGACGGCg -3'
miRNA:   3'- -CGUGUGu---------GGUGCCGGaccaCUGCUGg -5'
18947 5' -56.5 NC_004683.1 + 40534 0.66 0.708536
Target:  5'- -gGCGgGCCACucgaucGCCcuguucuggcUGGUGACGAUCa -3'
miRNA:   3'- cgUGUgUGGUGc-----CGG----------ACCACUGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 1051 0.66 0.708536
Target:  5'- cGguCAaGCCACGGCCaccacuguUGGUG-CGcGCCu -3'
miRNA:   3'- -CguGUgUGGUGCCGG--------ACCACuGC-UGG- -5'
18947 5' -56.5 NC_004683.1 + 13966 0.66 0.708536
Target:  5'- uGCcUACACCACcucaagGGCCggcacccguUGGUGACG-CUg -3'
miRNA:   3'- -CGuGUGUGGUG------CCGG---------ACCACUGCuGG- -5'
18947 5' -56.5 NC_004683.1 + 36895 0.66 0.708536
Target:  5'- aGCA-GCGCUACGaGCC-GGUGACG-Ca -3'
miRNA:   3'- -CGUgUGUGGUGC-CGGaCCACUGCuGg -5'
18947 5' -56.5 NC_004683.1 + 56508 0.66 0.697962
Target:  5'- gGC-CGCACCGCauGGCa-GGUaGGCGcACCg -3'
miRNA:   3'- -CGuGUGUGGUG--CCGgaCCA-CUGC-UGG- -5'
18947 5' -56.5 NC_004683.1 + 41662 0.66 0.697962
Target:  5'- -gACACAUCGCGGCUgaucGUGAUG-CUg -3'
miRNA:   3'- cgUGUGUGGUGCCGGac--CACUGCuGG- -5'
18947 5' -56.5 NC_004683.1 + 24585 0.66 0.697962
Target:  5'- gGCGgcUACCuCGGCCUcaugGGaGGCGACCc -3'
miRNA:   3'- -CGUguGUGGuGCCGGA----CCaCUGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 3490 0.66 0.697962
Target:  5'- -gGCGgGCUACGaGCCggaaucGGUGGUGGCCg -3'
miRNA:   3'- cgUGUgUGGUGC-CGGa-----CCACUGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 8033 0.66 0.697962
Target:  5'- -uGCGCACCGCGGUCgagc-GCGACa -3'
miRNA:   3'- cgUGUGUGGUGCCGGaccacUGCUGg -5'
18947 5' -56.5 NC_004683.1 + 24201 0.66 0.687327
Target:  5'- cGUACuuGCCGCGGCUgccGUcGuCGACCu -3'
miRNA:   3'- -CGUGugUGGUGCCGGac-CA-CuGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 4049 0.66 0.687327
Target:  5'- cGCGCGCuACCACGugcgcGCCgcccucgGGUG-CGAgCa -3'
miRNA:   3'- -CGUGUG-UGGUGC-----CGGa------CCACuGCUgG- -5'
18947 5' -56.5 NC_004683.1 + 53766 0.66 0.687327
Target:  5'- uGCACGgcuCGCCaACGGCaucacgGGUGAguacccgcgaUGACCa -3'
miRNA:   3'- -CGUGU---GUGG-UGCCGga----CCACU----------GCUGG- -5'
18947 5' -56.5 NC_004683.1 + 25364 0.66 0.687327
Target:  5'- uGCGCcugcaggcccgGCAgCGCGGCCagcaGUG-CGACCa -3'
miRNA:   3'- -CGUG-----------UGUgGUGCCGGac--CACuGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 51564 0.66 0.687327
Target:  5'- aGCGCACGCagaACgagGGCCUcgacGGgcuCGACCg -3'
miRNA:   3'- -CGUGUGUGg--UG---CCGGA----CCacuGCUGG- -5'
18947 5' -56.5 NC_004683.1 + 51625 0.66 0.687327
Target:  5'- uGCGCugGCgGCGcGCCUGccgugcGUGAUgGAUCa -3'
miRNA:   3'- -CGUGugUGgUGC-CGGAC------CACUG-CUGG- -5'
18947 5' -56.5 NC_004683.1 + 20900 0.66 0.687327
Target:  5'- gGC-CACAUCGCuGGCCcccGUGugGGCg -3'
miRNA:   3'- -CGuGUGUGGUG-CCGGac-CACugCUGg -5'
18947 5' -56.5 NC_004683.1 + 21681 0.66 0.687327
Target:  5'- uGCGCGCAUCAucaccggggUGGUCggugcgGGUGGCGcuggcagcGCCg -3'
miRNA:   3'- -CGUGUGUGGU---------GCCGGa-----CCACUGC--------UGG- -5'
18947 5' -56.5 NC_004683.1 + 35802 0.66 0.687327
Target:  5'- aCGCugACgCGCGGCaaGGgaaGAgGACCu -3'
miRNA:   3'- cGUGugUG-GUGCCGgaCCa--CUgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.