Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18947 | 5' | -56.5 | NC_004683.1 | + | 3490 | 0.66 | 0.697962 |
Target: 5'- -gGCGgGCUACGaGCCggaaucGGUGGUGGCCg -3' miRNA: 3'- cgUGUgUGGUGC-CGGa-----CCACUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 12645 | 0.66 | 0.708536 |
Target: 5'- gGCGcCGCugCugGGCCcgcuGUcGGCGAUCa -3' miRNA: 3'- -CGU-GUGugGugCCGGac--CA-CUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 8033 | 0.66 | 0.697962 |
Target: 5'- -uGCGCACCGCGGUCgagc-GCGACa -3' miRNA: 3'- cgUGUGUGGUGCCGGaccacUGCUGg -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 24585 | 0.66 | 0.697962 |
Target: 5'- gGCGgcUACCuCGGCCUcaugGGaGGCGACCc -3' miRNA: 3'- -CGUguGUGGuGCCGGA----CCaCUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 21589 | 0.66 | 0.687327 |
Target: 5'- gGCAUgauCACCAuCGGCgCguggGGUGAgGGCg -3' miRNA: 3'- -CGUGu--GUGGU-GCCG-Ga---CCACUgCUGg -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 51564 | 0.66 | 0.687327 |
Target: 5'- aGCGCACGCagaACgagGGCCUcgacGGgcuCGACCg -3' miRNA: 3'- -CGUGUGUGg--UG---CCGGA----CCacuGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 13966 | 0.66 | 0.708536 |
Target: 5'- uGCcUACACCACcucaagGGCCggcacccguUGGUGACG-CUg -3' miRNA: 3'- -CGuGUGUGGUG------CCGG---------ACCACUGCuGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 56508 | 0.66 | 0.697962 |
Target: 5'- gGC-CGCACCGCauGGCa-GGUaGGCGcACCg -3' miRNA: 3'- -CGuGUGUGGUG--CCGgaCCA-CUGC-UGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 40534 | 0.66 | 0.708536 |
Target: 5'- -gGCGgGCCACucgaucGCCcuguucuggcUGGUGACGAUCa -3' miRNA: 3'- cgUGUgUGGUGc-----CGG----------ACCACUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 1051 | 0.66 | 0.708536 |
Target: 5'- cGguCAaGCCACGGCCaccacuguUGGUG-CGcGCCu -3' miRNA: 3'- -CguGUgUGGUGCCGG--------ACCACuGC-UGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 21681 | 0.66 | 0.687327 |
Target: 5'- uGCGCGCAUCAucaccggggUGGUCggugcgGGUGGCGcuggcagcGCCg -3' miRNA: 3'- -CGUGUGUGGU---------GCCGGa-----CCACUGC--------UGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 39358 | 0.66 | 0.676641 |
Target: 5'- aGCGCAgGCCGCaaaGGCC-GGaugGGCuugGACCa -3' miRNA: 3'- -CGUGUgUGGUG---CCGGaCCa--CUG---CUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 20165 | 0.66 | 0.67557 |
Target: 5'- cGUGCACGaucgggcCCGCGGCCUcaacaccaGGa-ACGACCg -3' miRNA: 3'- -CGUGUGU-------GGUGCCGGA--------CCacUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 8154 | 0.66 | 0.655157 |
Target: 5'- cGCGCucgGCGCCGaGGCCgcgaaGGccGCGGCCa -3' miRNA: 3'- -CGUG---UGUGGUgCCGGa----CCacUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 6856 | 0.66 | 0.708536 |
Target: 5'- gGCACGCuuaccaagccCUACGGCCgcugGACGGCg -3' miRNA: 3'- -CGUGUGu---------GGUGCCGGaccaCUGCUGg -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 3285 | 0.66 | 0.676641 |
Target: 5'- gGCAgGC-CCGCcgacGCCUGGccGACGGCa -3' miRNA: 3'- -CGUgUGuGGUGc---CGGACCa-CUGCUGg -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 53766 | 0.66 | 0.687327 |
Target: 5'- uGCACGgcuCGCCaACGGCaucacgGGUGAguacccgcgaUGACCa -3' miRNA: 3'- -CGUGU---GUGG-UGCCGga----CCACU----------GCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 10041 | 0.66 | 0.683058 |
Target: 5'- uCACGCcgccgagccguucgGCCGCGGCggcgaCUGGUcgauccucaagaaGAUGACCg -3' miRNA: 3'- cGUGUG--------------UGGUGCCG-----GACCA-------------CUGCUGG- -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 20900 | 0.66 | 0.687327 |
Target: 5'- gGC-CACAUCGCuGGCCcccGUGugGGCg -3' miRNA: 3'- -CGuGUGUGGUG-CCGGac-CACugCUGg -5' |
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18947 | 5' | -56.5 | NC_004683.1 | + | 41404 | 0.66 | 0.687327 |
Target: 5'- -gGCugGCgGCGuGgCUGGUGugGcCCu -3' miRNA: 3'- cgUGugUGgUGC-CgGACCACugCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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