miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18948 3' -60.8 NC_004683.1 + 1695 0.66 0.412886
Target:  5'- cGCGGCcgGCGCGCUGCUGccUGa-CCuCa -3'
miRNA:   3'- uCGCCG--UGCGCGACGACu-ACgcGGuG- -5'
18948 3' -60.8 NC_004683.1 + 24259 0.66 0.412886
Target:  5'- gAGCGGCAgGCGCgcgGUcaUGAcGCgGCCu- -3'
miRNA:   3'- -UCGCCGUgCGCGa--CG--ACUaCG-CGGug -5'
18948 3' -60.8 NC_004683.1 + 25708 0.66 0.404695
Target:  5'- cGGCGGCagcucgcgguagcucACagggugccgucuuuGCGCUGCUGAUGaacugcgacgGCCGCc -3'
miRNA:   3'- -UCGCCG---------------UG--------------CGCGACGACUACg---------CGGUG- -5'
18948 3' -60.8 NC_004683.1 + 41400 0.66 0.403791
Target:  5'- cGuCGGCugGCgGCgugGCUGGUGUgGCCcuuGCg -3'
miRNA:   3'- uC-GCCGugCG-CGa--CGACUACG-CGG---UG- -5'
18948 3' -60.8 NC_004683.1 + 21372 0.66 0.403791
Target:  5'- cGGCgacugGGCAUGCgGC-GCUGAUGuCGCgGCc -3'
miRNA:   3'- -UCG-----CCGUGCG-CGaCGACUAC-GCGgUG- -5'
18948 3' -60.8 NC_004683.1 + 52442 0.66 0.403791
Target:  5'- uGCGaGaCGCGCGgUGCUcccGUGCCGCg -3'
miRNA:   3'- uCGC-C-GUGCGCgACGAcuaCGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 11046 0.66 0.394824
Target:  5'- -cCGGC-CGCGUUGCcgaaccgguucaUGGUcGCGCCAUc -3'
miRNA:   3'- ucGCCGuGCGCGACG------------ACUA-CGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 14876 0.66 0.394824
Target:  5'- uGCGuucGCGgGUGCUGCUGAUccCGCCGa -3'
miRNA:   3'- uCGC---CGUgCGCGACGACUAc-GCGGUg -5'
18948 3' -60.8 NC_004683.1 + 32054 0.66 0.394824
Target:  5'- uGGUGGauuacCGCGCUGCccUGA-GCGCCu- -3'
miRNA:   3'- -UCGCCgu---GCGCGACG--ACUaCGCGGug -5'
18948 3' -60.8 NC_004683.1 + 41261 0.66 0.385987
Target:  5'- uGGCuGUggGCGCccgUGCUGAU-CGCCGCc -3'
miRNA:   3'- -UCGcCGugCGCG---ACGACUAcGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 21521 0.66 0.385987
Target:  5'- uGCGGUAgcaGUGuCUGCgccgGCGCCGCu -3'
miRNA:   3'- uCGCCGUg--CGC-GACGacuaCGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 27198 0.66 0.377281
Target:  5'- uAGCGGCGaugacugcCGCGCUgGCgcgucucGAUGcCGCCGa -3'
miRNA:   3'- -UCGCCGU--------GCGCGA-CGa------CUAC-GCGGUg -5'
18948 3' -60.8 NC_004683.1 + 10600 0.66 0.368708
Target:  5'- aGGCGcGC-CGCGCUGa-GGUGCGggcgguCCGCg -3'
miRNA:   3'- -UCGC-CGuGCGCGACgaCUACGC------GGUG- -5'
18948 3' -60.8 NC_004683.1 + 37392 0.66 0.368708
Target:  5'- --aGGCuuCGCGCUGCUGGUGaaacucgGCC-Cg -3'
miRNA:   3'- ucgCCGu-GCGCGACGACUACg------CGGuG- -5'
18948 3' -60.8 NC_004683.1 + 21701 0.66 0.368708
Target:  5'- uGGuCGGUGCGgGUggcGCUGGcaGCGCCGCc -3'
miRNA:   3'- -UC-GCCGUGCgCGa--CGACUa-CGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 52233 0.66 0.368708
Target:  5'- cGUGuCACGCaGCUGCgUGAUGUGCguCa -3'
miRNA:   3'- uCGCcGUGCG-CGACG-ACUACGCGguG- -5'
18948 3' -60.8 NC_004683.1 + 9274 0.67 0.36027
Target:  5'- cGCGGgGCGCauGCccggGCUGGacgUGCGCCccGCg -3'
miRNA:   3'- uCGCCgUGCG--CGa---CGACU---ACGCGG--UG- -5'
18948 3' -60.8 NC_004683.1 + 47503 0.67 0.351968
Target:  5'- -cCGGCcuUGCGCUGCc---GCGCCGCg -3'
miRNA:   3'- ucGCCGu-GCGCGACGacuaCGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 8622 0.67 0.351968
Target:  5'- -aCGGCAC-CGUUcGCUGGU-CGCCGCu -3'
miRNA:   3'- ucGCCGUGcGCGA-CGACUAcGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 8487 0.67 0.351968
Target:  5'- -cCGGCACGacuccCGCgGCUGGUG-GCUACa -3'
miRNA:   3'- ucGCCGUGC-----GCGaCGACUACgCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.