miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18948 3' -60.8 NC_004683.1 + 1695 0.66 0.412886
Target:  5'- cGCGGCcgGCGCGCUGCUGccUGa-CCuCa -3'
miRNA:   3'- uCGCCG--UGCGCGACGACu-ACgcGGuG- -5'
18948 3' -60.8 NC_004683.1 + 1848 0.7 0.231769
Target:  5'- cGGcCGGCguuGCGUUGUUGAUGC-CCGCg -3'
miRNA:   3'- -UC-GCCGug-CGCGACGACUACGcGGUG- -5'
18948 3' -60.8 NC_004683.1 + 2476 0.67 0.320129
Target:  5'- cGGUGuuCGCGUGCaUGCUGGUGCGgCAg -3'
miRNA:   3'- -UCGCc-GUGCGCG-ACGACUACGCgGUg -5'
18948 3' -60.8 NC_004683.1 + 2910 0.67 0.343802
Target:  5'- cGCGGCAUGuCGUgGCUGA--CGCCGa -3'
miRNA:   3'- uCGCCGUGC-GCGaCGACUacGCGGUg -5'
18948 3' -60.8 NC_004683.1 + 3968 0.68 0.290498
Target:  5'- gGGCGGCgcgcacgugguaGCGCGCUguucgacaacugGCUGAUG-GCCcCg -3'
miRNA:   3'- -UCGCCG------------UGCGCGA------------CGACUACgCGGuG- -5'
18948 3' -60.8 NC_004683.1 + 5022 0.67 0.343802
Target:  5'- cGC-GCAUGCGCcGCUGGc-CGCCGCu -3'
miRNA:   3'- uCGcCGUGCGCGaCGACUacGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 5243 0.68 0.283435
Target:  5'- uGGCGGCgGCGCGCacGUUGucgcugGCGCCcuGCa -3'
miRNA:   3'- -UCGCCG-UGCGCGa-CGACua----CGCGG--UG- -5'
18948 3' -60.8 NC_004683.1 + 6675 0.69 0.263061
Target:  5'- cGCGGCGCGcCGCUggugugGCUGGcacGUGUCGCc -3'
miRNA:   3'- uCGCCGUGC-GCGA------CGACUa--CGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 8487 0.67 0.351968
Target:  5'- -cCGGCACGacuccCGCgGCUGGUG-GCUACa -3'
miRNA:   3'- ucGCCGUGC-----GCGaCGACUACgCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 8622 0.67 0.351968
Target:  5'- -aCGGCAC-CGUUcGCUGGU-CGCCGCu -3'
miRNA:   3'- ucGCCGUGcGCGA-CGACUAcGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 9274 0.67 0.36027
Target:  5'- cGCGGgGCGCauGCccggGCUGGacgUGCGCCccGCg -3'
miRNA:   3'- uCGCCgUGCG--CGa---CGACU---ACGCGG--UG- -5'
18948 3' -60.8 NC_004683.1 + 9858 0.73 0.140266
Target:  5'- aGGCGGU-CGCGCUG-UGGUGCcGCUACc -3'
miRNA:   3'- -UCGCCGuGCGCGACgACUACG-CGGUG- -5'
18948 3' -60.8 NC_004683.1 + 10600 0.66 0.368708
Target:  5'- aGGCGcGC-CGCGCUGa-GGUGCGggcgguCCGCg -3'
miRNA:   3'- -UCGC-CGuGCGCGACgaCUACGC------GGUG- -5'
18948 3' -60.8 NC_004683.1 + 11046 0.66 0.394824
Target:  5'- -cCGGC-CGCGUUGCcgaaccgguucaUGGUcGCGCCAUc -3'
miRNA:   3'- ucGCCGuGCGCGACG------------ACUA-CGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 12490 0.69 0.263061
Target:  5'- uGCuGGCGCGCgguggccaGCUGCUGAgcggugGCGUUGCc -3'
miRNA:   3'- uCG-CCGUGCG--------CGACGACUa-----CGCGGUG- -5'
18948 3' -60.8 NC_004683.1 + 12642 0.75 0.09025
Target:  5'- cGCGGCGC-CGCUGCUGG-GC-CCGCu -3'
miRNA:   3'- uCGCCGUGcGCGACGACUaCGcGGUG- -5'
18948 3' -60.8 NC_004683.1 + 14320 0.74 0.119068
Target:  5'- aGGCGGCACagcuugcggcaGUGCUGCgGGUcGCGgCCACg -3'
miRNA:   3'- -UCGCCGUG-----------CGCGACGaCUA-CGC-GGUG- -5'
18948 3' -60.8 NC_004683.1 + 14876 0.66 0.394824
Target:  5'- uGCGuucGCGgGUGCUGCUGAUccCGCCGa -3'
miRNA:   3'- uCGC---CGUgCGCGACGACUAc-GCGGUg -5'
18948 3' -60.8 NC_004683.1 + 19249 0.75 0.087763
Target:  5'- cGCGGUGCGCGUcgaGCUGAUGCcCUACa -3'
miRNA:   3'- uCGCCGUGCGCGa--CGACUACGcGGUG- -5'
18948 3' -60.8 NC_004683.1 + 20397 0.68 0.312514
Target:  5'- cGCGGgacaugaACGCGCUGCcGccGuCGCCGCc -3'
miRNA:   3'- uCGCCg------UGCGCGACGaCuaC-GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.