miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18949 3' -57.7 NC_004683.1 + 26990 0.66 0.628498
Target:  5'- gACGCGAucaUCuuGuCGGCCGAccuCGCCgaUGAc -3'
miRNA:   3'- -UGUGUU---AGggCuGCCGGCU---GCGG--ACU- -5'
18949 3' -57.7 NC_004683.1 + 3742 0.66 0.628498
Target:  5'- cACACucUCCagCGGCGGCCGG-GCCg-- -3'
miRNA:   3'- -UGUGuuAGG--GCUGCCGGCUgCGGacu -5'
18949 3' -57.7 NC_004683.1 + 5803 0.66 0.628498
Target:  5'- -gACGAUgCCCGugGGCUGguuGC-CCUGGc -3'
miRNA:   3'- ugUGUUA-GGGCugCCGGC---UGcGGACU- -5'
18949 3' -57.7 NC_004683.1 + 40795 0.66 0.628498
Target:  5'- gACGCGcUCgCCGACGGC-GAgGCCg-- -3'
miRNA:   3'- -UGUGUuAG-GGCUGCCGgCUgCGGacu -5'
18949 3' -57.7 NC_004683.1 + 41289 0.66 0.617734
Target:  5'- gGCGgcGUCCuCGGCGGCCuuCGCCg-- -3'
miRNA:   3'- -UGUguUAGG-GCUGCCGGcuGCGGacu -5'
18949 3' -57.7 NC_004683.1 + 42579 0.66 0.617734
Target:  5'- -aGCGcgCCgCGGCGGUCGGgGCCg-- -3'
miRNA:   3'- ugUGUuaGG-GCUGCCGGCUgCGGacu -5'
18949 3' -57.7 NC_004683.1 + 39869 0.66 0.617734
Target:  5'- -gACGAUUCCcgaGACGGCgGAUGCgCUGc -3'
miRNA:   3'- ugUGUUAGGG---CUGCCGgCUGCG-GACu -5'
18949 3' -57.7 NC_004683.1 + 22411 0.66 0.617734
Target:  5'- cGCACAGUUCCGGCucGGCCuggucggcgacGGCGCguaUGGg -3'
miRNA:   3'- -UGUGUUAGGGCUG--CCGG-----------CUGCGg--ACU- -5'
18949 3' -57.7 NC_004683.1 + 32609 0.66 0.617734
Target:  5'- gGCACGGgugcUCaaGGCGGCCGgucuGCGCCa-- -3'
miRNA:   3'- -UGUGUU----AGggCUGCCGGC----UGCGGacu -5'
18949 3' -57.7 NC_004683.1 + 46681 0.66 0.61128
Target:  5'- uGCugG-UCCCGACGGgcgguacguggcgcaCCGACGCgacgagcaCUGAc -3'
miRNA:   3'- -UGugUuAGGGCUGCC---------------GGCUGCG--------GACU- -5'
18949 3' -57.7 NC_004683.1 + 5836 0.66 0.606982
Target:  5'- -aGCGAUCUCGGCGGCgG-UGCCc-- -3'
miRNA:   3'- ugUGUUAGGGCUGCCGgCuGCGGacu -5'
18949 3' -57.7 NC_004683.1 + 8489 0.66 0.59625
Target:  5'- gGCACGAcUCCCG-CGGCUgGugGCUa-- -3'
miRNA:   3'- -UGUGUU-AGGGCuGCCGG-CugCGGacu -5'
18949 3' -57.7 NC_004683.1 + 2396 0.66 0.59625
Target:  5'- gACACuggccggCCCgucGACGGaauUGGCGCCUGAc -3'
miRNA:   3'- -UGUGuua----GGG---CUGCCg--GCUGCGGACU- -5'
18949 3' -57.7 NC_004683.1 + 32043 0.66 0.59625
Target:  5'- --cCGAUCCUGACGGggccCCGACGCa--- -3'
miRNA:   3'- uguGUUAGGGCUGCC----GGCUGCGgacu -5'
18949 3' -57.7 NC_004683.1 + 19658 0.66 0.593036
Target:  5'- -aGCAAguugCCCGACGgguugaugcccaacGCCGACaGCgCUGAu -3'
miRNA:   3'- ugUGUUa---GGGCUGC--------------CGGCUG-CG-GACU- -5'
18949 3' -57.7 NC_004683.1 + 1563 0.66 0.585548
Target:  5'- cCACGuuggaaucGUCCCGGCGGCCcGCGgCg-- -3'
miRNA:   3'- uGUGU--------UAGGGCUGCCGGcUGCgGacu -5'
18949 3' -57.7 NC_004683.1 + 24153 0.66 0.585548
Target:  5'- -gGCGAUCgCCGACcugcacaaGGCCGcgucaugaccgcGCGCCUGc -3'
miRNA:   3'- ugUGUUAG-GGCUG--------CCGGC------------UGCGGACu -5'
18949 3' -57.7 NC_004683.1 + 16071 0.66 0.585548
Target:  5'- uGCGCGGgucggugCCCGAUgccuccaugaGGUCGGCGCCg-- -3'
miRNA:   3'- -UGUGUUa------GGGCUG----------CCGGCUGCGGacu -5'
18949 3' -57.7 NC_004683.1 + 56941 0.66 0.585548
Target:  5'- aACGCAGaCCCcgggggGugGGUCGGCGUCgUGAc -3'
miRNA:   3'- -UGUGUUaGGG------CugCCGGCUGCGG-ACU- -5'
18949 3' -57.7 NC_004683.1 + 47064 0.66 0.574883
Target:  5'- uGCACGGccaCCCGACGaUCGACGUCgagGAu -3'
miRNA:   3'- -UGUGUUa--GGGCUGCcGGCUGCGGa--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.