miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18949 5' -55.4 NC_004683.1 + 42927 0.66 0.763414
Target:  5'- cCGUCGGAgaaGCCGaCcGCGACGGgcaUGUGg -3'
miRNA:   3'- -GUAGCUUg--CGGC-GcUGCUGCC---ACACa -5'
18949 5' -55.4 NC_004683.1 + 10132 0.66 0.763414
Target:  5'- aGUCGc-CGCCGCGGCcgaacggcucGGCGGcGUGa -3'
miRNA:   3'- gUAGCuuGCGGCGCUG----------CUGCCaCACa -5'
18949 5' -55.4 NC_004683.1 + 8607 0.66 0.752256
Target:  5'- --gCGGugGCCGCccugcagucgguuGuCGACGGUcGUGUa -3'
miRNA:   3'- guaGCUugCGGCG-------------CuGCUGCCA-CACA- -5'
18949 5' -55.4 NC_004683.1 + 36881 0.66 0.743019
Target:  5'- -uUCGAAuCGUCGuUGACgcacuggaGACGGUGUGg -3'
miRNA:   3'- guAGCUU-GCGGC-GCUG--------CUGCCACACa -5'
18949 5' -55.4 NC_004683.1 + 21548 0.66 0.711635
Target:  5'- aCAUCGAcgugauccUGCUggGCGGCGGCGGUGg-- -3'
miRNA:   3'- -GUAGCUu-------GCGG--CGCUGCUGCCACaca -5'
18949 5' -55.4 NC_004683.1 + 27541 0.67 0.690313
Target:  5'- cCAgcgCGcuCGCUGCGGCugccuGCGGUGUGa -3'
miRNA:   3'- -GUa--GCuuGCGGCGCUGc----UGCCACACa -5'
18949 5' -55.4 NC_004683.1 + 42576 0.67 0.690313
Target:  5'- --cCGAgcGCGCCGCGGCGGuCGGggccgGUcGUc -3'
miRNA:   3'- guaGCU--UGCGGCGCUGCU-GCCa----CA-CA- -5'
18949 5' -55.4 NC_004683.1 + 5817 0.67 0.690313
Target:  5'- cCcgCGAGCGCgGUGACGAUGcccGUGg -3'
miRNA:   3'- -GuaGCUUGCGgCGCUGCUGCca-CACa -5'
18949 5' -55.4 NC_004683.1 + 4110 0.67 0.690313
Target:  5'- cCGUCGAugGCCuuacCGGCGAUGGcGUc- -3'
miRNA:   3'- -GUAGCUugCGGc---GCUGCUGCCaCAca -5'
18949 5' -55.4 NC_004683.1 + 3702 0.67 0.657947
Target:  5'- aCGUUGcgcGAUGCCgGCGAgGACGGUGa-- -3'
miRNA:   3'- -GUAGC---UUGCGG-CGCUgCUGCCACaca -5'
18949 5' -55.4 NC_004683.1 + 55813 0.67 0.657947
Target:  5'- uGUCGuGCGCgaaCGUcAUGACGGUGUGa -3'
miRNA:   3'- gUAGCuUGCG---GCGcUGCUGCCACACa -5'
18949 5' -55.4 NC_004683.1 + 44532 0.67 0.657947
Target:  5'- aCGUCGGGCGCCG--GCG-CGGUGg-- -3'
miRNA:   3'- -GUAGCUUGCGGCgcUGCuGCCACaca -5'
18949 5' -55.4 NC_004683.1 + 56100 0.68 0.636235
Target:  5'- uCGUCGAcggagACGaaGuCGGCGGCGGUGgugGUg -3'
miRNA:   3'- -GUAGCU-----UGCggC-GCUGCUGCCACa--CA- -5'
18949 5' -55.4 NC_004683.1 + 49152 0.68 0.625369
Target:  5'- aGUCGAAaacCCGCGGCG-CGGUGa-- -3'
miRNA:   3'- gUAGCUUgc-GGCGCUGCuGCCACaca -5'
18949 5' -55.4 NC_004683.1 + 7656 0.69 0.582054
Target:  5'- gGUUGAcgacggagaguACGCCGCGuCGugGGcgGUGa -3'
miRNA:   3'- gUAGCU-----------UGCGGCGCuGCugCCa-CACa -5'
18949 5' -55.4 NC_004683.1 + 6656 0.69 0.560605
Target:  5'- cCAUCGAcgccguGCugGCCGCGGCGcgccGCuGGUGUGg -3'
miRNA:   3'- -GUAGCU------UG--CGGCGCUGC----UG-CCACACa -5'
18949 5' -55.4 NC_004683.1 + 41280 0.69 0.53938
Target:  5'- -cUCGGcggccuuCGCCGCGuCGGCGG-GUGUc -3'
miRNA:   3'- guAGCUu------GCGGCGCuGCUGCCaCACA- -5'
18949 5' -55.4 NC_004683.1 + 49912 0.7 0.528869
Target:  5'- gAUCGGAcCGCaUGCcACGAgGGUGUGUg -3'
miRNA:   3'- gUAGCUU-GCG-GCGcUGCUgCCACACA- -5'
18949 5' -55.4 NC_004683.1 + 55075 0.7 0.517395
Target:  5'- gAUCGAG-GCCGcCGACGcgcugaugacgcuGCGGUGUGc -3'
miRNA:   3'- gUAGCUUgCGGC-GCUGC-------------UGCCACACa -5'
18949 5' -55.4 NC_004683.1 + 42653 0.7 0.501914
Target:  5'- --cCGAcCGCCGCGGCGcgcucggccucgcucAUGGUGUGc -3'
miRNA:   3'- guaGCUuGCGGCGCUGC---------------UGCCACACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.