miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18950 3' -55.6 NC_004683.1 + 46037 0.66 0.746386
Target:  5'- gCgGCCCuugGCCACCGAGugauucgugcACUCCGGg- -3'
miRNA:   3'- -GgUGGGcg-UGGUGGCUU----------UGAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 5657 0.66 0.746386
Target:  5'- -aGCCCuGCGCCuucuugACCGGGAuCUCCGGc- -3'
miRNA:   3'- ggUGGG-CGUGG------UGGCUUU-GAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 23978 0.66 0.74329
Target:  5'- aCGCCuaCGCGgCGCUGGAACUCggcaacgaccuucuCGGUCa -3'
miRNA:   3'- gGUGG--GCGUgGUGGCUUUGAG--------------GUCAG- -5'
18950 3' -55.6 NC_004683.1 + 42713 0.66 0.736025
Target:  5'- uCUACCaCGC-UgACCGggGCUCgCuGUCg -3'
miRNA:   3'- -GGUGG-GCGuGgUGGCuuUGAG-GuCAG- -5'
18950 3' -55.6 NC_004683.1 + 41097 0.66 0.736025
Target:  5'- gC-CCCGCGCCGCUGccACggCCGGg- -3'
miRNA:   3'- gGuGGGCGUGGUGGCuuUGa-GGUCag -5'
18950 3' -55.6 NC_004683.1 + 11896 0.66 0.736025
Target:  5'- cCCACCaGCACCccCCGGgcuGACUCCuGa- -3'
miRNA:   3'- -GGUGGgCGUGGu-GGCU---UUGAGGuCag -5'
18950 3' -55.6 NC_004683.1 + 8568 0.66 0.736025
Target:  5'- gCCACCa--GCCGCgGGAGuCgugCCGGUCa -3'
miRNA:   3'- -GGUGGgcgUGGUGgCUUU-Ga--GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 23790 0.66 0.732896
Target:  5'- gCCGCCgGUGCCGCCGcggcggaacgucgaGAAC-CC-GUCg -3'
miRNA:   3'- -GGUGGgCGUGGUGGC--------------UUUGaGGuCAG- -5'
18950 3' -55.6 NC_004683.1 + 18127 0.66 0.725561
Target:  5'- gCCGCCgGCACCuaccgcacGCCGugGCggCCGGa- -3'
miRNA:   3'- -GGUGGgCGUGG--------UGGCuuUGa-GGUCag -5'
18950 3' -55.6 NC_004683.1 + 48132 0.66 0.725561
Target:  5'- gCGCUCGCGCCACagcacacAUUCCAGg- -3'
miRNA:   3'- gGUGGGCGUGGUGgcuu---UGAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 2203 0.66 0.725561
Target:  5'- aCGCCCGcCACCACCaGGGCgauggCCAc-- -3'
miRNA:   3'- gGUGGGC-GUGGUGGcUUUGa----GGUcag -5'
18950 3' -55.6 NC_004683.1 + 10353 0.66 0.715006
Target:  5'- cCCACagaCGCACCACC----UUUCAGUUg -3'
miRNA:   3'- -GGUGg--GCGUGGUGGcuuuGAGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 5990 0.66 0.715006
Target:  5'- uCCAcaguCCCGCGCCGCCcugggugucGAACUgCCGGaUCu -3'
miRNA:   3'- -GGU----GGGCGUGGUGGc--------UUUGA-GGUC-AG- -5'
18950 3' -55.6 NC_004683.1 + 6809 0.66 0.715006
Target:  5'- gCCGCCCGgGCCGUCGAc-UUCCAugacGUCa -3'
miRNA:   3'- -GGUGGGCgUGGUGGCUuuGAGGU----CAG- -5'
18950 3' -55.6 NC_004683.1 + 14775 0.66 0.70437
Target:  5'- aCgACCCGaugACCAUCGAGACgacCUGGUUg -3'
miRNA:   3'- -GgUGGGCg--UGGUGGCUUUGa--GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 21160 0.66 0.703303
Target:  5'- -aACCgGUACCGCgGAAACcaugccgUCCGGUg -3'
miRNA:   3'- ggUGGgCGUGGUGgCUUUG-------AGGUCAg -5'
18950 3' -55.6 NC_004683.1 + 20656 0.66 0.693666
Target:  5'- gCCGCaCCGcCGCCACC-AGACgccccgCCAGg- -3'
miRNA:   3'- -GGUG-GGC-GUGGUGGcUUUGa-----GGUCag -5'
18950 3' -55.6 NC_004683.1 + 41195 0.66 0.692592
Target:  5'- aCACCCGCcgacgcggcgaagGCCGCCGAgGACgccgCCAa-- -3'
miRNA:   3'- gGUGGGCG-------------UGGUGGCU-UUGa---GGUcag -5'
18950 3' -55.6 NC_004683.1 + 21966 0.66 0.692592
Target:  5'- cCCGCUCaGCGCCACCGGuguACgucugCCcacucaccgucugAGUCa -3'
miRNA:   3'- -GGUGGG-CGUGGUGGCUu--UGa----GG-------------UCAG- -5'
18950 3' -55.6 NC_004683.1 + 56593 0.67 0.682903
Target:  5'- cCCACCaaaggcaGCACCACCGcGGGCcgCgGGUa -3'
miRNA:   3'- -GGUGGg------CGUGGUGGC-UUUGa-GgUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.