miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18950 3' -55.6 NC_004683.1 + 282 0.7 0.480153
Target:  5'- -gAUCCGUgACCuCCGggGCcCCAGUCa -3'
miRNA:   3'- ggUGGGCG-UGGuGGCuuUGaGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 447 0.72 0.376431
Target:  5'- -gGCCCGCACCGgugucgacugUCGAGGuCUCCAGcCg -3'
miRNA:   3'- ggUGGGCGUGGU----------GGCUUU-GAGGUCaG- -5'
18950 3' -55.6 NC_004683.1 + 493 0.67 0.627496
Target:  5'- aCCGCCUGCGCCAucaccgcCCGcAGCUCUu-UCg -3'
miRNA:   3'- -GGUGGGCGUGGU-------GGCuUUGAGGucAG- -5'
18950 3' -55.6 NC_004683.1 + 955 0.67 0.665589
Target:  5'- -uGCCCGCGCCACgGAAcacgccauuggugggGCcguccUCCAGcCg -3'
miRNA:   3'- ggUGGGCGUGGUGgCUU---------------UG-----AGGUCaG- -5'
18950 3' -55.6 NC_004683.1 + 1652 0.71 0.403209
Target:  5'- gCCGCCgCGgGCCGCCGGGACgauUCCAa-- -3'
miRNA:   3'- -GGUGG-GCgUGGUGGCUUUG---AGGUcag -5'
18950 3' -55.6 NC_004683.1 + 2203 0.66 0.725561
Target:  5'- aCGCCCGcCACCACCaGGGCgauggCCAc-- -3'
miRNA:   3'- gGUGGGC-GUGGUGGcUUUGa----GGUcag -5'
18950 3' -55.6 NC_004683.1 + 2815 0.67 0.672093
Target:  5'- gCCGCCgCGCACCAuCCGuuccucGACcaCCAcGUCg -3'
miRNA:   3'- -GGUGG-GCGUGGU-GGCu-----UUGa-GGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 3594 0.7 0.459232
Target:  5'- aUCACCCGaguucaccgcggcCACCACCGA--UUCCGGcUCg -3'
miRNA:   3'- -GGUGGGC-------------GUGGUGGCUuuGAGGUC-AG- -5'
18950 3' -55.6 NC_004683.1 + 4148 0.72 0.376431
Target:  5'- cCCACUgcucgCGCACCACCGAGAa-CCGGa- -3'
miRNA:   3'- -GGUGG-----GCGUGGUGGCUUUgaGGUCag -5'
18950 3' -55.6 NC_004683.1 + 4626 0.68 0.57433
Target:  5'- aCGgUCGCGCUgauucaucaGCCGAAGCUUCAuGUCa -3'
miRNA:   3'- gGUgGGCGUGG---------UGGCUUUGAGGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 4874 0.71 0.421717
Target:  5'- gCCGCCuggagCGCGCCGCCGAAcugGC-CCGcGUCc -3'
miRNA:   3'- -GGUGG-----GCGUGGUGGCUU---UGaGGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 5657 0.66 0.746386
Target:  5'- -aGCCCuGCGCCuucuugACCGGGAuCUCCGGc- -3'
miRNA:   3'- ggUGGG-CGUGG------UGGCUUU-GAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 5751 0.83 0.078747
Target:  5'- gCGCUCGCgggcaccGCCGCCGAGaucGCUCCAGUCa -3'
miRNA:   3'- gGUGGGCG-------UGGUGGCUU---UGAGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 5990 0.66 0.715006
Target:  5'- uCCAcaguCCCGCGCCGCCcugggugucGAACUgCCGGaUCu -3'
miRNA:   3'- -GGU----GGGCGUGGUGGc--------UUUGA-GGUC-AG- -5'
18950 3' -55.6 NC_004683.1 + 6088 0.71 0.421717
Target:  5'- --gUCCGCGCuCGCCGAGGugUUCCAGUUg -3'
miRNA:   3'- gguGGGCGUG-GUGGCUUU--GAGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 6809 0.66 0.715006
Target:  5'- gCCGCCCGgGCCGUCGAc-UUCCAugacGUCa -3'
miRNA:   3'- -GGUGGGCgUGGUGGCUuuGAGGU----CAG- -5'
18950 3' -55.6 NC_004683.1 + 7033 0.71 0.412399
Target:  5'- aCgAgCUGCACCACCGcccGCcgCCAGUCg -3'
miRNA:   3'- -GgUgGGCGUGGUGGCuu-UGa-GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 7476 0.72 0.367776
Target:  5'- gCGCCCG-GCCGCCGAA--UCCAgGUCg -3'
miRNA:   3'- gGUGGGCgUGGUGGCUUugAGGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 8568 0.66 0.736025
Target:  5'- gCCACCa--GCCGCgGGAGuCgugCCGGUCa -3'
miRNA:   3'- -GGUGGgcgUGGUGgCUUU-Ga--GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 8817 0.67 0.661246
Target:  5'- cUCACCgaaCGCGCCGgCGAGAUaCCAGcCu -3'
miRNA:   3'- -GGUGG---GCGUGGUgGCUUUGaGGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.