miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18950 3' -55.6 NC_004683.1 + 12886 0.68 0.595951
Target:  5'- aCACaagGCAUCGCCGAcuGCUCCAG-Cg -3'
miRNA:   3'- gGUGgg-CGUGGUGGCUu-UGAGGUCaG- -5'
18950 3' -55.6 NC_004683.1 + 48357 0.69 0.510817
Target:  5'- aUC-CCCGCGCUGCuCGAcACUCCGGc- -3'
miRNA:   3'- -GGuGGGCGUGGUG-GCUuUGAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 49344 0.69 0.521221
Target:  5'- gCUGCCCGCACCAC---GACggCCGGUg -3'
miRNA:   3'- -GGUGGGCGUGGUGgcuUUGa-GGUCAg -5'
18950 3' -55.6 NC_004683.1 + 56010 0.69 0.521221
Target:  5'- aCCACCaC-CGCCGCCGAcuucguCUCC-GUCg -3'
miRNA:   3'- -GGUGG-GcGUGGUGGCUuu----GAGGuCAG- -5'
18950 3' -55.6 NC_004683.1 + 40935 0.69 0.521221
Target:  5'- gCCGagcugaCCGCGCCGCCGuuGC-CC-GUCg -3'
miRNA:   3'- -GGUg-----GGCGUGGUGGCuuUGaGGuCAG- -5'
18950 3' -55.6 NC_004683.1 + 17738 0.69 0.552895
Target:  5'- aUCACCgGCAUCGCCG--GC-CUGGUCa -3'
miRNA:   3'- -GGUGGgCGUGGUGGCuuUGaGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 56190 0.69 0.563586
Target:  5'- cCCACCCGCAucgucagcuuCUACCucGGCcgCCAGUa -3'
miRNA:   3'- -GGUGGGCGU----------GGUGGcuUUGa-GGUCAg -5'
18950 3' -55.6 NC_004683.1 + 33608 0.68 0.57433
Target:  5'- gCCGCUgguaGUACCGCaCGggGCugacaccgaUCCGGUCg -3'
miRNA:   3'- -GGUGGg---CGUGGUG-GCuuUG---------AGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 46643 0.68 0.57433
Target:  5'- gCCgACCCGCACCAUgacgacccguaaCGAGACUgggcugCUGGUCc -3'
miRNA:   3'- -GG-UGGGCGUGGUG------------GCUUUGA------GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 26428 0.69 0.510817
Target:  5'- cCCGCCgGUGCCGCCGAGuugGC-CgCAGUg -3'
miRNA:   3'- -GGUGGgCGUGGUGGCUU---UGaG-GUCAg -5'
18950 3' -55.6 NC_004683.1 + 53587 0.69 0.510817
Target:  5'- gCCGgCCGCACCGCCGg----CCGcGUCu -3'
miRNA:   3'- -GGUgGGCGUGGUGGCuuugaGGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 12941 0.69 0.510817
Target:  5'- aCGgCCGCcCCACCGGugg-CCGGUCu -3'
miRNA:   3'- gGUgGGCGuGGUGGCUuugaGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 5751 0.83 0.078747
Target:  5'- gCGCUCGCgggcaccGCCGCCGAGaucGCUCCAGUCa -3'
miRNA:   3'- gGUGGGCG-------UGGUGGCUU---UGAGGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 4874 0.71 0.421717
Target:  5'- gCCGCCuggagCGCGCCGCCGAAcugGC-CCGcGUCc -3'
miRNA:   3'- -GGUGG-----GCGUGGUGGCUU---UGaGGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 24257 0.7 0.469135
Target:  5'- -gGCCCGCGCCuacGCCGAGuccuacgccgcGCUcaugggcCCGGUCg -3'
miRNA:   3'- ggUGGGCGUGG---UGGCUU-----------UGA-------GGUCAG- -5'
18950 3' -55.6 NC_004683.1 + 27572 0.7 0.480153
Target:  5'- aCCGCCuUGC-CCGCCGAcGugUCCGGg- -3'
miRNA:   3'- -GGUGG-GCGuGGUGGCU-UugAGGUCag -5'
18950 3' -55.6 NC_004683.1 + 47126 0.7 0.480153
Target:  5'- aUCGCCCGCGCCAUgGAcuuC-CCAGcCg -3'
miRNA:   3'- -GGUGGGCGUGGUGgCUuu-GaGGUCaG- -5'
18950 3' -55.6 NC_004683.1 + 40980 0.7 0.500501
Target:  5'- gCCGCgCGCAUCGCCGcuGCUacCCGcGUCu -3'
miRNA:   3'- -GGUGgGCGUGGUGGCuuUGA--GGU-CAG- -5'
18950 3' -55.6 NC_004683.1 + 44586 0.7 0.500501
Target:  5'- gCCACgCGCGCCGCCGAc-CUCaCGuUCg -3'
miRNA:   3'- -GGUGgGCGUGGUGGCUuuGAG-GUcAG- -5'
18950 3' -55.6 NC_004683.1 + 9418 0.69 0.510817
Target:  5'- gCCGCCCaaGCCACCGAcuaucucgGAUUCaugagCAGUCa -3'
miRNA:   3'- -GGUGGGcgUGGUGGCU--------UUGAG-----GUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.