miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18950 5' -56.2 NC_004683.1 + 10966 0.66 0.697033
Target:  5'- uGAACCGGUucgGAacGCGGCCGgACaGGCu -3'
miRNA:   3'- uCUUGGCUA---CU--CGCUGGUgUGcCCGu -5'
18950 5' -56.2 NC_004683.1 + 4995 0.66 0.697033
Target:  5'- gAGGcuuGCCGAucugcucgUGAGuCGAUCggACGCGGGCc -3'
miRNA:   3'- -UCU---UGGCU--------ACUC-GCUGG--UGUGCCCGu -5'
18950 5' -56.2 NC_004683.1 + 45747 0.66 0.686257
Target:  5'- cAGcGCCGAUGuGcCGGCgGC-CGGGUg -3'
miRNA:   3'- -UCuUGGCUACuC-GCUGgUGuGCCCGu -5'
18950 5' -56.2 NC_004683.1 + 56922 0.66 0.686257
Target:  5'- -cGACCGGUGGGCcACUgaACAUGGcGCGc -3'
miRNA:   3'- ucUUGGCUACUCGcUGG--UGUGCC-CGU- -5'
18950 5' -56.2 NC_004683.1 + 38051 0.66 0.686257
Target:  5'- cAGGGCCGcUG-GCGcCCaACGCGGaGCGu -3'
miRNA:   3'- -UCUUGGCuACuCGCuGG-UGUGCC-CGU- -5'
18950 5' -56.2 NC_004683.1 + 6148 0.66 0.686257
Target:  5'- -cGGCUGGUucGCGuacuACCGCAUGGGCGc -3'
miRNA:   3'- ucUUGGCUAcuCGC----UGGUGUGCCCGU- -5'
18950 5' -56.2 NC_004683.1 + 345 0.66 0.685176
Target:  5'- uGAccACCGuc--GCGACCAgccccgcCGCGGGCAg -3'
miRNA:   3'- uCU--UGGCuacuCGCUGGU-------GUGCCCGU- -5'
18950 5' -56.2 NC_004683.1 + 2737 0.66 0.67543
Target:  5'- aGGAACgGAUGgugcgcGGCGGCCGCgGCGagcucGGCGg -3'
miRNA:   3'- -UCUUGgCUAC------UCGCUGGUG-UGC-----CCGU- -5'
18950 5' -56.2 NC_004683.1 + 23199 0.66 0.67543
Target:  5'- uGAGCuucuCGAUGAGCG-CCACGCugccgcuGGCGa -3'
miRNA:   3'- uCUUG----GCUACUCGCuGGUGUGc------CCGU- -5'
18950 5' -56.2 NC_004683.1 + 40330 0.66 0.664562
Target:  5'- uGAcCCGAUGAGCGAguaucucgaCGCcuCGGGCc -3'
miRNA:   3'- uCUuGGCUACUCGCUg--------GUGu-GCCCGu -5'
18950 5' -56.2 NC_004683.1 + 5711 0.66 0.664562
Target:  5'- cGGcACCGGccaGGGCaACCAgccCACGGGCAu -3'
miRNA:   3'- -UCuUGGCUa--CUCGcUGGU---GUGCCCGU- -5'
18950 5' -56.2 NC_004683.1 + 47346 0.66 0.653665
Target:  5'- --cACCGcgGucGGUGGCCGCGacaaGGGCAu -3'
miRNA:   3'- ucuUGGCuaC--UCGCUGGUGUg---CCCGU- -5'
18950 5' -56.2 NC_004683.1 + 10918 0.66 0.653665
Target:  5'- ---uCCGA-GGGUGGCCACACcGGCc -3'
miRNA:   3'- ucuuGGCUaCUCGCUGGUGUGcCCGu -5'
18950 5' -56.2 NC_004683.1 + 46464 0.66 0.642748
Target:  5'- uGGGCgCGGU-AGCGGCCcCACGGGg- -3'
miRNA:   3'- uCUUG-GCUAcUCGCUGGuGUGCCCgu -5'
18950 5' -56.2 NC_004683.1 + 11911 0.66 0.642748
Target:  5'- cGGGCUGAcuccUGAGC-AgCugGCGGGCGu -3'
miRNA:   3'- uCUUGGCU----ACUCGcUgGugUGCCCGU- -5'
18950 5' -56.2 NC_004683.1 + 18248 0.66 0.642748
Target:  5'- cGAGCCGGUGAccGUGACgGCGgcuuCGGGg- -3'
miRNA:   3'- uCUUGGCUACU--CGCUGgUGU----GCCCgu -5'
18950 5' -56.2 NC_004683.1 + 37838 0.66 0.642748
Target:  5'- uGGGCUuGUGAcGCGGCCGCcUGGGUg -3'
miRNA:   3'- uCUUGGcUACU-CGCUGGUGuGCCCGu -5'
18950 5' -56.2 NC_004683.1 + 33055 0.67 0.631821
Target:  5'- -uGACCGAccgGGGCGACCAaggcuuGCGcGGCu -3'
miRNA:   3'- ucUUGGCUa--CUCGCUGGUg-----UGC-CCGu -5'
18950 5' -56.2 NC_004683.1 + 55930 0.67 0.620894
Target:  5'- uGGAGCUGGUGgaggcauaAGUGACCAcCAUcGGCAu -3'
miRNA:   3'- -UCUUGGCUAC--------UCGCUGGU-GUGcCCGU- -5'
18950 5' -56.2 NC_004683.1 + 37321 0.67 0.609978
Target:  5'- aAGAGCUGAUagccgaagccGAGaCGAUCgcaaACACGGGCc -3'
miRNA:   3'- -UCUUGGCUA----------CUC-GCUGG----UGUGCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.