miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18951 3' -59.5 NC_004683.1 + 25515 0.66 0.488041
Target:  5'- cGUGGUugaaGCUgacGCCGugcCGcUGUGGCUCGg -3'
miRNA:   3'- -UACCGg---CGA---CGGCuu-GC-ACACCGAGC- -5'
18951 3' -59.5 NC_004683.1 + 15267 0.66 0.478044
Target:  5'- -gGGCCGCUGCUGcccAACcagGUGGUcuacaUCGa -3'
miRNA:   3'- uaCCGGCGACGGC---UUGca-CACCG-----AGC- -5'
18951 3' -59.5 NC_004683.1 + 10126 0.66 0.468149
Target:  5'- --cGCCGCgGCCGAAC----GGCUCGg -3'
miRNA:   3'- uacCGGCGaCGGCUUGcacaCCGAGC- -5'
18951 3' -59.5 NC_004683.1 + 51137 0.66 0.468149
Target:  5'- -gGGCCGCaagGCCGAcuggACGgccacGUGGCg-- -3'
miRNA:   3'- uaCCGGCGa--CGGCU----UGCa----CACCGagc -5'
18951 3' -59.5 NC_004683.1 + 49315 0.66 0.458359
Target:  5'- -aGGgCGCc-CCGGACGUGUGGUUg- -3'
miRNA:   3'- uaCCgGCGacGGCUUGCACACCGAgc -5'
18951 3' -59.5 NC_004683.1 + 11045 0.66 0.448681
Target:  5'- -cGGCCGCguUGCCGAACc---GGUUCa -3'
miRNA:   3'- uaCCGGCG--ACGGCUUGcacaCCGAGc -5'
18951 3' -59.5 NC_004683.1 + 3126 0.67 0.429669
Target:  5'- -cGGgCGCcgaUGCCG-AUGUGgucGGCUCGa -3'
miRNA:   3'- uaCCgGCG---ACGGCuUGCACa--CCGAGC- -5'
18951 3' -59.5 NC_004683.1 + 23889 0.67 0.420343
Target:  5'- -aGGUCGUUGCCGAguuccagcgccGCGUaggcGUGGCggcCGa -3'
miRNA:   3'- uaCCGGCGACGGCU-----------UGCA----CACCGa--GC- -5'
18951 3' -59.5 NC_004683.1 + 39363 0.67 0.393114
Target:  5'- -aGGCCGCaaagGCCGGAUG---GGCUUGg -3'
miRNA:   3'- uaCCGGCGa---CGGCUUGCacaCCGAGC- -5'
18951 3' -59.5 NC_004683.1 + 25755 0.68 0.384296
Target:  5'- -gGGCCGCUGCCGucgagcACGc-UGGC-CGa -3'
miRNA:   3'- uaCCGGCGACGGCu-----UGCacACCGaGC- -5'
18951 3' -59.5 NC_004683.1 + 39507 0.68 0.367057
Target:  5'- cUGGCCGCgagGgCGAAUGUaaGUGGUggCGg -3'
miRNA:   3'- uACCGGCGa--CgGCUUGCA--CACCGa-GC- -5'
18951 3' -59.5 NC_004683.1 + 25789 0.69 0.296243
Target:  5'- cUGGCCGUaUGUCG---GUGUGGCUCa -3'
miRNA:   3'- uACCGGCG-ACGGCuugCACACCGAGc -5'
18951 3' -59.5 NC_004683.1 + 43140 0.7 0.289065
Target:  5'- -cGGCUGCgugGCCGGAuCGacUGGCUCa -3'
miRNA:   3'- uaCCGGCGa--CGGCUU-GCacACCGAGc -5'
18951 3' -59.5 NC_004683.1 + 2635 0.7 0.282024
Target:  5'- ---cCUGCUGCCGAACGUGUccgacGGCUUc -3'
miRNA:   3'- uaccGGCGACGGCUUGCACA-----CCGAGc -5'
18951 3' -59.5 NC_004683.1 + 12988 0.7 0.271042
Target:  5'- aGUGGCUGCgcgagcgcggcuuccUGCCGGGCGccgGUGGCccCGg -3'
miRNA:   3'- -UACCGGCG---------------ACGGCUUGCa--CACCGa-GC- -5'
18951 3' -59.5 NC_004683.1 + 14325 0.7 0.261718
Target:  5'- -gGGCCGCUggugGUCGGAUGUgcgGUGGUUCa -3'
miRNA:   3'- uaCCGGCGA----CGGCUUGCA---CACCGAGc -5'
18951 3' -59.5 NC_004683.1 + 19228 0.7 0.255219
Target:  5'- gGUGGCCGCcgccggGUCGAACGcgGUGcGCgUCGa -3'
miRNA:   3'- -UACCGGCGa-----CGGCUUGCa-CAC-CG-AGC- -5'
18951 3' -59.5 NC_004683.1 + 6670 0.71 0.242618
Target:  5'- cUGGCCGCggcgcGCCGcugGUGUGGCUgGc -3'
miRNA:   3'- uACCGGCGa----CGGCuugCACACCGAgC- -5'
18951 3' -59.5 NC_004683.1 + 5779 0.71 0.242618
Target:  5'- cUGGCCGgUGCCGGuCGUGaGGgUCa -3'
miRNA:   3'- uACCGGCgACGGCUuGCACaCCgAGc -5'
18951 3' -59.5 NC_004683.1 + 50374 0.73 0.182332
Target:  5'- -gGGCCGCUGCCccGAC-UGUGGCUgGc -3'
miRNA:   3'- uaCCGGCGACGGc-UUGcACACCGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.