Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18952 | 3' | -52.7 | NC_004683.1 | + | 15144 | 0.67 | 0.808297 |
Target: 5'- cAGCAg-GGGuucGugCGGAUCCGCAACAu -3' miRNA: 3'- cUUGUagCUC---UugGCCUGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 4963 | 0.67 | 0.788696 |
Target: 5'- -cGCGUCGAG-GCCGGuucCUCGCAggGCGc -3' miRNA: 3'- cuUGUAGCUCuUGGCCu--GGGCGU--UGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 32500 | 0.67 | 0.798586 |
Target: 5'- cGGGCAUCGuGcAGCCGGACguggCGCAGa- -3' miRNA: 3'- -CUUGUAGCuC-UUGGCCUGg---GCGUUgu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 46105 | 0.67 | 0.798586 |
Target: 5'- --uCGUCGAGAACgucgUGGACgCGUGGCAc -3' miRNA: 3'- cuuGUAGCUCUUG----GCCUGgGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 54611 | 0.67 | 0.798586 |
Target: 5'- cGACGUCGccGACCGGACgaUCGcCAACAu -3' miRNA: 3'- cUUGUAGCucUUGGCCUG--GGC-GUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 25883 | 0.67 | 0.778637 |
Target: 5'- cGGCGUCGAGuucGCCGGGCagaCGCuGGCc -3' miRNA: 3'- cUUGUAGCUCu--UGGCCUGg--GCG-UUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 22693 | 0.66 | 0.844254 |
Target: 5'- aGACAUCGAaucuccugucguuGAuuacuggugacaGCCGGugCCGCAcCAu -3' miRNA: 3'- cUUGUAGCU-------------CU------------UGGCCugGGCGUuGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 14677 | 0.66 | 0.845132 |
Target: 5'- --uCGUCGGGGucaucuuuccAgCGGGCCUGCGACc -3' miRNA: 3'- cuuGUAGCUCU----------UgGCCUGGGCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 37159 | 0.66 | 0.853789 |
Target: 5'- cGAGCAUCGAuGACCuGGGCaUCGCcGCc -3' miRNA: 3'- -CUUGUAGCUcUUGG-CCUG-GGCGuUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 26946 | 0.66 | 0.862206 |
Target: 5'- cAGCAUCGAGuucAACCucGAUCCGCAGu- -3' miRNA: 3'- cUUGUAGCUC---UUGGc-CUGGGCGUUgu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 23808 | 0.66 | 0.862206 |
Target: 5'- cGGCGcCGGGGuggugccgccGCCGGugCCGCcGCGg -3' miRNA: 3'- cUUGUaGCUCU----------UGGCCugGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 2903 | 0.66 | 0.827137 |
Target: 5'- cGGAC-UCGuu-GCCGGACUgGCGACc -3' miRNA: 3'- -CUUGuAGCucuUGGCCUGGgCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 30568 | 0.66 | 0.844254 |
Target: 5'- cGGCAUCGAGGACCGuGGugucaaagggaauUCCGUcGCGa -3' miRNA: 3'- cUUGUAGCUCUUGGC-CU-------------GGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 47083 | 0.66 | 0.857185 |
Target: 5'- cGACGUCGAgGAuguccuguuccgcauGCUGGAgCCGCGAgAg -3' miRNA: 3'- cUUGUAGCU-CU---------------UGGCCUgGGCGUUgU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 40414 | 0.66 | 0.870376 |
Target: 5'- aGGCGUCGAGAuacucgcucAUCGGGucacCgCCGCGGCGa -3' miRNA: 3'- cUUGUAGCUCU---------UGGCCU----G-GGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 14199 | 0.66 | 0.844254 |
Target: 5'- cGAgGUUGAGAucaaacuGCUGGugcguggccgcgACCCGCAGCAc -3' miRNA: 3'- cUUgUAGCUCU-------UGGCC------------UGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 51016 | 0.66 | 0.853789 |
Target: 5'- -----cCGAGGGCUGGauGCCCGaCGACGa -3' miRNA: 3'- cuuguaGCUCUUGGCC--UGGGC-GUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 48581 | 0.66 | 0.845132 |
Target: 5'- cGGCggCGAGAG-CGGACCUGguGCc -3' miRNA: 3'- cUUGuaGCUCUUgGCCUGGGCguUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 17439 | 0.66 | 0.853789 |
Target: 5'- -uACGUCGAGAACac--CCCGUGGCGa -3' miRNA: 3'- cuUGUAGCUCUUGgccuGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 25281 | 0.66 | 0.870376 |
Target: 5'- uGGCcgCGcu-GCCGGGCCUGCAggcGCAc -3' miRNA: 3'- cUUGuaGCucuUGGCCUGGGCGU---UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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