miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 3' -52.7 NC_004683.1 + 48950 1.09 0.002006
Target:  5'- aGAACAUCGAGAACCGGACCCGCAACAu -3'
miRNA:   3'- -CUUGUAGCUCUUGGCCUGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 11124 0.76 0.334531
Target:  5'- cGACAUcCGGGGugCucgaagaGGACCCGCAGCAa -3'
miRNA:   3'- cUUGUA-GCUCUugG-------CCUGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 13129 0.73 0.474943
Target:  5'- gGGGCAUCGgcGGGACCGGugCCGaUGACc -3'
miRNA:   3'- -CUUGUAGC--UCUUGGCCugGGC-GUUGu -5'
18952 3' -52.7 NC_004683.1 + 39104 0.72 0.51687
Target:  5'- cGAACGuugUCGAuGGACCGGACuCCGUcucgAGCAg -3'
miRNA:   3'- -CUUGU---AGCU-CUUGGCCUG-GGCG----UUGU- -5'
18952 3' -52.7 NC_004683.1 + 15991 0.72 0.538387
Target:  5'- aGGCAUCGGGcACC-GACCCGC-GCAa -3'
miRNA:   3'- cUUGUAGCUCuUGGcCUGGGCGuUGU- -5'
18952 3' -52.7 NC_004683.1 + 6991 0.71 0.560203
Target:  5'- aGACGUCGAGAccgaGCgCGGACCUGaAGCGc -3'
miRNA:   3'- cUUGUAGCUCU----UG-GCCUGGGCgUUGU- -5'
18952 3' -52.7 NC_004683.1 + 10577 0.7 0.60448
Target:  5'- cGGCG-CGA-AGCCGG-CCCGCAGCAu -3'
miRNA:   3'- cUUGUaGCUcUUGGCCuGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 44186 0.69 0.671418
Target:  5'- cGGAUccUCGGGcGACaucaaGGACCCGCAGCGc -3'
miRNA:   3'- -CUUGu-AGCUC-UUGg----CCUGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 5030 0.69 0.682504
Target:  5'- cAGCAUCGAGGACUGccGAUuCCGCGAUc -3'
miRNA:   3'- cUUGUAGCUCUUGGC--CUG-GGCGUUGu -5'
18952 3' -52.7 NC_004683.1 + 49075 0.69 0.682504
Target:  5'- aGGGCggCGGGAucgcGgCGGGCCCGCggUAc -3'
miRNA:   3'- -CUUGuaGCUCU----UgGCCUGGGCGuuGU- -5'
18952 3' -52.7 NC_004683.1 + 42615 0.68 0.726237
Target:  5'- gGGugGUCGGcGACCGcGacgacGCCCGCGACGa -3'
miRNA:   3'- -CUugUAGCUcUUGGC-C-----UGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 3773 0.68 0.726237
Target:  5'- cGGCAUCGcgcaacguGAACgGGGCCUGCcGCAc -3'
miRNA:   3'- cUUGUAGCu-------CUUGgCCUGGGCGuUGU- -5'
18952 3' -52.7 NC_004683.1 + 30646 0.68 0.736959
Target:  5'- uGugGUCGAGAcUCGGACuuGCGGgAg -3'
miRNA:   3'- cUugUAGCUCUuGGCCUGggCGUUgU- -5'
18952 3' -52.7 NC_004683.1 + 45981 0.68 0.736959
Target:  5'- -uGCG-CGGGAACCGGcgcgggucaAUCUGCGACAg -3'
miRNA:   3'- cuUGUaGCUCUUGGCC---------UGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 2728 0.68 0.747572
Target:  5'- uGGugGUCGAGGAaCGGAUggugcgcggcggCCGCGGCGa -3'
miRNA:   3'- -CUugUAGCUCUUgGCCUG------------GGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 39986 0.68 0.747572
Target:  5'- uGAACAgcUCGuAGAccgucguCCGGccaACCCGCAGCGc -3'
miRNA:   3'- -CUUGU--AGC-UCUu------GGCC---UGGGCGUUGU- -5'
18952 3' -52.7 NC_004683.1 + 26498 0.68 0.758064
Target:  5'- -----aCGAGGACUGauguccGACCCGCAGCu -3'
miRNA:   3'- cuuguaGCUCUUGGC------CUGGGCGUUGu -5'
18952 3' -52.7 NC_004683.1 + 25883 0.67 0.778637
Target:  5'- cGGCGUCGAGuucGCCGGGCagaCGCuGGCc -3'
miRNA:   3'- cUUGUAGCUCu--UGGCCUGg--GCG-UUGu -5'
18952 3' -52.7 NC_004683.1 + 54492 0.67 0.788696
Target:  5'- uGAGCA-CGucGACCaGGCCCGcCAACAg -3'
miRNA:   3'- -CUUGUaGCucUUGGcCUGGGC-GUUGU- -5'
18952 3' -52.7 NC_004683.1 + 4963 0.67 0.788696
Target:  5'- -cGCGUCGAG-GCCGGuucCUCGCAggGCGc -3'
miRNA:   3'- cuUGUAGCUCuUGGCCu--GGGCGU--UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.