Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18952 | 3' | -52.7 | NC_004683.1 | + | 2728 | 0.68 | 0.747572 |
Target: 5'- uGGugGUCGAGGAaCGGAUggugcgcggcggCCGCGGCGa -3' miRNA: 3'- -CUugUAGCUCUUgGCCUG------------GGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 2903 | 0.66 | 0.827137 |
Target: 5'- cGGAC-UCGuu-GCCGGACUgGCGACc -3' miRNA: 3'- -CUUGuAGCucuUGGCCUGGgCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 3773 | 0.68 | 0.726237 |
Target: 5'- cGGCAUCGcgcaacguGAACgGGGCCUGCcGCAc -3' miRNA: 3'- cUUGUAGCu-------CUUGgCCUGGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 4963 | 0.67 | 0.788696 |
Target: 5'- -cGCGUCGAG-GCCGGuucCUCGCAggGCGc -3' miRNA: 3'- cuUGUAGCUCuUGGCCu--GGGCGU--UGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 5030 | 0.69 | 0.682504 |
Target: 5'- cAGCAUCGAGGACUGccGAUuCCGCGAUc -3' miRNA: 3'- cUUGUAGCUCUUGGC--CUG-GGCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 6991 | 0.71 | 0.560203 |
Target: 5'- aGACGUCGAGAccgaGCgCGGACCUGaAGCGc -3' miRNA: 3'- cUUGUAGCUCU----UG-GCCUGGGCgUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 10577 | 0.7 | 0.60448 |
Target: 5'- cGGCG-CGA-AGCCGG-CCCGCAGCAu -3' miRNA: 3'- cUUGUaGCUcUUGGCCuGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 11124 | 0.76 | 0.334531 |
Target: 5'- cGACAUcCGGGGugCucgaagaGGACCCGCAGCAa -3' miRNA: 3'- cUUGUA-GCUCUugG-------CCUGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 12579 | 0.66 | 0.827137 |
Target: 5'- cGGCAUuucCGAGGGucugcCCGGACUCGcCGACAa -3' miRNA: 3'- cUUGUA---GCUCUU-----GGCCUGGGC-GUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 13129 | 0.73 | 0.474943 |
Target: 5'- gGGGCAUCGgcGGGACCGGugCCGaUGACc -3' miRNA: 3'- -CUUGUAGC--UCUUGGCCugGGC-GUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 14199 | 0.66 | 0.844254 |
Target: 5'- cGAgGUUGAGAucaaacuGCUGGugcguggccgcgACCCGCAGCAc -3' miRNA: 3'- cUUgUAGCUCU-------UGGCC------------UGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 14677 | 0.66 | 0.845132 |
Target: 5'- --uCGUCGGGGucaucuuuccAgCGGGCCUGCGACc -3' miRNA: 3'- cuuGUAGCUCU----------UgGCCUGGGCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 15144 | 0.67 | 0.808297 |
Target: 5'- cAGCAg-GGGuucGugCGGAUCCGCAACAu -3' miRNA: 3'- cUUGUagCUC---UugGCCUGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 15991 | 0.72 | 0.538387 |
Target: 5'- aGGCAUCGGGcACC-GACCCGC-GCAa -3' miRNA: 3'- cUUGUAGCUCuUGGcCUGGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 17439 | 0.66 | 0.853789 |
Target: 5'- -uACGUCGAGAACac--CCCGUGGCGa -3' miRNA: 3'- cuUGUAGCUCUUGgccuGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 22693 | 0.66 | 0.844254 |
Target: 5'- aGACAUCGAaucuccugucguuGAuuacuggugacaGCCGGugCCGCAcCAu -3' miRNA: 3'- cUUGUAGCU-------------CU------------UGGCCugGGCGUuGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 23770 | 0.67 | 0.817818 |
Target: 5'- gGAACGUCGAGAACCcgucggcgcGGAUCUuGCGc-- -3' miRNA: 3'- -CUUGUAGCUCUUGG---------CCUGGG-CGUugu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 23808 | 0.66 | 0.862206 |
Target: 5'- cGGCGcCGGGGuggugccgccGCCGGugCCGCcGCGg -3' miRNA: 3'- cUUGUaGCUCU----------UGGCCugGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 25281 | 0.66 | 0.870376 |
Target: 5'- uGGCcgCGcu-GCCGGGCCUGCAggcGCAc -3' miRNA: 3'- cUUGuaGCucuUGGCCUGGGCGU---UGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 25883 | 0.67 | 0.778637 |
Target: 5'- cGGCGUCGAGuucGCCGGGCagaCGCuGGCc -3' miRNA: 3'- cUUGUAGCUCu--UGGCCUGg--GCG-UUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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