Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18952 | 3' | -52.7 | NC_004683.1 | + | 26498 | 0.68 | 0.758064 |
Target: 5'- -----aCGAGGACUGauguccGACCCGCAGCu -3' miRNA: 3'- cuuguaGCUCUUGGC------CUGGGCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 26946 | 0.66 | 0.862206 |
Target: 5'- cAGCAUCGAGuucAACCucGAUCCGCAGu- -3' miRNA: 3'- cUUGUAGCUC---UUGGc-CUGGGCGUUgu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 30568 | 0.66 | 0.844254 |
Target: 5'- cGGCAUCGAGGACCGuGGugucaaagggaauUCCGUcGCGa -3' miRNA: 3'- cUUGUAGCUCUUGGC-CU-------------GGGCGuUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 30646 | 0.68 | 0.736959 |
Target: 5'- uGugGUCGAGAcUCGGACuuGCGGgAg -3' miRNA: 3'- cUugUAGCUCUuGGCCUGggCGUUgU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 31393 | 0.67 | 0.817818 |
Target: 5'- cGACAUCGccgccACCGccacGGCCCGCAGCu -3' miRNA: 3'- cUUGUAGCucu--UGGC----CUGGGCGUUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 32500 | 0.67 | 0.798586 |
Target: 5'- cGGGCAUCGuGcAGCCGGACguggCGCAGa- -3' miRNA: 3'- -CUUGUAGCuC-UUGGCCUGg---GCGUUgu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 37159 | 0.66 | 0.853789 |
Target: 5'- cGAGCAUCGAuGACCuGGGCaUCGCcGCc -3' miRNA: 3'- -CUUGUAGCUcUUGG-CCUG-GGCGuUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 39104 | 0.72 | 0.51687 |
Target: 5'- cGAACGuugUCGAuGGACCGGACuCCGUcucgAGCAg -3' miRNA: 3'- -CUUGU---AGCU-CUUGGCCUG-GGCG----UUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 39986 | 0.68 | 0.747572 |
Target: 5'- uGAACAgcUCGuAGAccgucguCCGGccaACCCGCAGCGc -3' miRNA: 3'- -CUUGU--AGC-UCUu------GGCC---UGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 40414 | 0.66 | 0.870376 |
Target: 5'- aGGCGUCGAGAuacucgcucAUCGGGucacCgCCGCGGCGa -3' miRNA: 3'- cUUGUAGCUCU---------UGGCCU----G-GGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 42615 | 0.68 | 0.726237 |
Target: 5'- gGGugGUCGGcGACCGcGacgacGCCCGCGACGa -3' miRNA: 3'- -CUugUAGCUcUUGGC-C-----UGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 44186 | 0.69 | 0.671418 |
Target: 5'- cGGAUccUCGGGcGACaucaaGGACCCGCAGCGc -3' miRNA: 3'- -CUUGu-AGCUC-UUGg----CCUGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 45981 | 0.68 | 0.736959 |
Target: 5'- -uGCG-CGGGAACCGGcgcgggucaAUCUGCGACAg -3' miRNA: 3'- cuUGUaGCUCUUGGCC---------UGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 46105 | 0.67 | 0.798586 |
Target: 5'- --uCGUCGAGAACgucgUGGACgCGUGGCAc -3' miRNA: 3'- cuuGUAGCUCUUG----GCCUGgGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 47083 | 0.66 | 0.857185 |
Target: 5'- cGACGUCGAgGAuguccuguuccgcauGCUGGAgCCGCGAgAg -3' miRNA: 3'- cUUGUAGCU-CU---------------UGGCCUgGGCGUUgU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 48581 | 0.66 | 0.845132 |
Target: 5'- cGGCggCGAGAG-CGGACCUGguGCc -3' miRNA: 3'- cUUGuaGCUCUUgGCCUGGGCguUGu -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 48950 | 1.09 | 0.002006 |
Target: 5'- aGAACAUCGAGAACCGGACCCGCAACAu -3' miRNA: 3'- -CUUGUAGCUCUUGGCCUGGGCGUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 49075 | 0.69 | 0.682504 |
Target: 5'- aGGGCggCGGGAucgcGgCGGGCCCGCggUAc -3' miRNA: 3'- -CUUGuaGCUCU----UgGCCUGGGCGuuGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 51016 | 0.66 | 0.853789 |
Target: 5'- -----cCGAGGGCUGGauGCCCGaCGACGa -3' miRNA: 3'- cuuguaGCUCUUGGCC--UGGGC-GUUGU- -5' |
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18952 | 3' | -52.7 | NC_004683.1 | + | 54492 | 0.67 | 0.788696 |
Target: 5'- uGAGCA-CGucGACCaGGCCCGcCAACAg -3' miRNA: 3'- -CUUGUaGCucUUGGcCUGGGC-GUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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