miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 43031 0.66 0.372419
Target:  5'- --aGCCuCGGccuugcgccacauGCCCGUCGCGGUCgGCu -3'
miRNA:   3'- ucaUGGcGCC-------------CGGGCGGCGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 4734 0.66 0.364993
Target:  5'- -cUACuCGCaGGCCCgcaaccggGCCGacgaGGUCCACg -3'
miRNA:   3'- ucAUG-GCGcCCGGG--------CGGCg---CUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 1765 0.66 0.364993
Target:  5'- --aGCgCGCcGGCCgCGCUGCGAUCguCg -3'
miRNA:   3'- ucaUG-GCGcCCGG-GCGGCGCUAGguG- -5'
18952 5' -62.8 NC_004683.1 + 13496 0.66 0.364993
Target:  5'- gGGUGuuGagcgcgaaCGGGgCCGCCuGCGggCCACc -3'
miRNA:   3'- -UCAUggC--------GCCCgGGCGG-CGCuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 8378 0.66 0.364174
Target:  5'- --gACgGUGaucGGCCCcgcgcggGCCGCGAUCCAg -3'
miRNA:   3'- ucaUGgCGC---CCGGG-------CGGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 46368 0.66 0.356862
Target:  5'- aAGcUGCCggaGCGGGCCCcgugggGCCGCua-CCGCg -3'
miRNA:   3'- -UC-AUGG---CGCCCGGG------CGGCGcuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 20493 0.66 0.353645
Target:  5'- cGGUGCCGCcguuggccgccccGGGUgCGCCGCcagcugccagugcaGAUCCc- -3'
miRNA:   3'- -UCAUGGCG-------------CCCGgGCGGCG--------------CUAGGug -5'
18952 5' -62.8 NC_004683.1 + 42702 0.66 0.340985
Target:  5'- ---gUCGCGGGCgUCGUCGCGGUCg-- -3'
miRNA:   3'- ucauGGCGCCCG-GGCGGCGCUAGgug -5'
18952 5' -62.8 NC_004683.1 + 16074 0.66 0.340985
Target:  5'- cGUugCGCGGGUCggUGCC-CGAugccUCCAUg -3'
miRNA:   3'- uCAugGCGCCCGG--GCGGcGCU----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 2151 0.66 0.33324
Target:  5'- cGUGCUgGCGGGCCUGggGUGGUCCc- -3'
miRNA:   3'- uCAUGG-CGCCCGGGCggCGCUAGGug -5'
18952 5' -62.8 NC_004683.1 + 21134 0.66 0.33324
Target:  5'- -aUGCCGCGcugcuGGUCCcgaacaucccgGCCGCGGaCCACg -3'
miRNA:   3'- ucAUGGCGC-----CCGGG-----------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 22193 0.67 0.325625
Target:  5'- gGGUugCGCGGGgCgGgCGaCGAgccgCCACc -3'
miRNA:   3'- -UCAugGCGCCCgGgCgGC-GCUa---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 28417 0.67 0.325625
Target:  5'- --aGCUGCGGGCgC-UCGCGGUCUAUc -3'
miRNA:   3'- ucaUGGCGCCCGgGcGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 46638 0.67 0.325625
Target:  5'- cAGUACCGCucgauGCCgGCC-CGgAUCCGCg -3'
miRNA:   3'- -UCAUGGCGcc---CGGgCGGcGC-UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 52952 0.67 0.325625
Target:  5'- cAGcGCUGCaGGGUUCGCCGCuGGaucUCCAUg -3'
miRNA:   3'- -UCaUGGCG-CCCGGGCGGCG-CU---AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 25992 0.67 0.317399
Target:  5'- -uUACCGCGGcgaucucGCUgGCCGCGuUCCuGCg -3'
miRNA:   3'- ucAUGGCGCC-------CGGgCGGCGCuAGG-UG- -5'
18952 5' -62.8 NC_004683.1 + 26433 0.67 0.310785
Target:  5'- cGGUGCCGCcgaguuGGCCgCagugcacaCCGCGAUCCAg -3'
miRNA:   3'- -UCAUGGCGc-----CCGG-Gc-------GGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 44784 0.67 0.310785
Target:  5'- --gGCgGCGGGCCgCGugcCCGCGAU-CGCg -3'
miRNA:   3'- ucaUGgCGCCCGG-GC---GGCGCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 12728 0.67 0.310785
Target:  5'- --cGCCgacaGCGGGCCCagcagcggcGCCGCGG-CCAg -3'
miRNA:   3'- ucaUGG----CGCCCGGG---------CGGCGCUaGGUg -5'
18952 5' -62.8 NC_004683.1 + 47501 0.67 0.30356
Target:  5'- --gGCCuuGCGcuGCCgCGCCGCGAcaUCCGCg -3'
miRNA:   3'- ucaUGG--CGCc-CGG-GCGGCGCU--AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.