miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 24704 0.71 0.176019
Target:  5'- --gGCCGCGcG-CCGCCGCGA-CCGCa -3'
miRNA:   3'- ucaUGGCGCcCgGGCGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 52616 0.71 0.154616
Target:  5'- gAGUACUGCGGGCCgUGCCaGCacguGUUCACc -3'
miRNA:   3'- -UCAUGGCGCCCGG-GCGG-CGc---UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 12644 0.71 0.158699
Target:  5'- cGGcGCCGCugcuGGGCCCGCUgucgGCGAUCaGCg -3'
miRNA:   3'- -UCaUGGCG----CCCGGGCGG----CGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 24436 0.71 0.154616
Target:  5'- --gACCGCGuGGCCUGCgGCGAcgagUCgGCg -3'
miRNA:   3'- ucaUGGCGC-CCGGGCGgCGCU----AGgUG- -5'
18952 5' -62.8 NC_004683.1 + 10816 0.71 0.162879
Target:  5'- --cGCCGCGucuuGGCCCGCCGCgccGAUaCCAg -3'
miRNA:   3'- ucaUGGCGC----CCGGGCGGCG---CUA-GGUg -5'
18952 5' -62.8 NC_004683.1 + 1650 0.72 0.132061
Target:  5'- --cGCCGCGGG-CCGCCGgGAcgauUCCAa -3'
miRNA:   3'- ucaUGGCGCCCgGGCGGCgCU----AGGUg -5'
18952 5' -62.8 NC_004683.1 + 48694 0.73 0.121957
Target:  5'- gAGU-CCGCGGGCCCaGUCGgGGUgCAUc -3'
miRNA:   3'- -UCAuGGCGCCCGGG-CGGCgCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 53621 0.75 0.090759
Target:  5'- --aGCUGCGgcgcgaucaGGCCCGCCGCGAccuggCCGCg -3'
miRNA:   3'- ucaUGGCGC---------CCGGGCGGCGCUa----GGUG- -5'
18952 5' -62.8 NC_004683.1 + 20243 0.75 0.081416
Target:  5'- --gGCCGCGGGCCCGaUCGUGcacgCCACc -3'
miRNA:   3'- ucaUGGCGCCCGGGC-GGCGCua--GGUG- -5'
18952 5' -62.8 NC_004683.1 + 15617 0.78 0.05394
Target:  5'- --gGCCGCGGGCacgCCGCUGCGGagguaUCCACu -3'
miRNA:   3'- ucaUGGCGCCCG---GGCGGCGCU-----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 48985 1.09 0.000205
Target:  5'- aAGUACCGCGGGCCCGCCGCGAUCCACg -3'
miRNA:   3'- -UCAUGGCGCCCGGGCGGCGCUAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.