Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18952 | 5' | -62.8 | NC_004683.1 | + | 48985 | 1.09 | 0.000205 |
Target: 5'- aAGUACCGCGGGCCCGCCGCGAUCCACg -3' miRNA: 3'- -UCAUGGCGCCCGGGCGGCGCUAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 15617 | 0.78 | 0.05394 |
Target: 5'- --gGCCGCGGGCacgCCGCUGCGGagguaUCCACu -3' miRNA: 3'- ucaUGGCGCCCG---GGCGGCGCU-----AGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 20243 | 0.75 | 0.081416 |
Target: 5'- --gGCCGCGGGCCCGaUCGUGcacgCCACc -3' miRNA: 3'- ucaUGGCGCCCGGGC-GGCGCua--GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 53621 | 0.75 | 0.090759 |
Target: 5'- --aGCUGCGgcgcgaucaGGCCCGCCGCGAccuggCCGCg -3' miRNA: 3'- ucaUGGCGC---------CCGGGCGGCGCUa----GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 48694 | 0.73 | 0.121957 |
Target: 5'- gAGU-CCGCGGGCCCaGUCGgGGUgCAUc -3' miRNA: 3'- -UCAuGGCGCCCGGG-CGGCgCUAgGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 1650 | 0.72 | 0.132061 |
Target: 5'- --cGCCGCGGG-CCGCCGgGAcgauUCCAa -3' miRNA: 3'- ucaUGGCGCCCgGGCGGCgCU----AGGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 52616 | 0.71 | 0.154616 |
Target: 5'- gAGUACUGCGGGCCgUGCCaGCacguGUUCACc -3' miRNA: 3'- -UCAUGGCGCCCGG-GCGG-CGc---UAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 24436 | 0.71 | 0.154616 |
Target: 5'- --gACCGCGuGGCCUGCgGCGAcgagUCgGCg -3' miRNA: 3'- ucaUGGCGC-CCGGGCGgCGCU----AGgUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 12644 | 0.71 | 0.158699 |
Target: 5'- cGGcGCCGCugcuGGGCCCGCUgucgGCGAUCaGCg -3' miRNA: 3'- -UCaUGGCG----CCCGGGCGG----CGCUAGgUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 2180 | 0.71 | 0.162457 |
Target: 5'- -uUGCCGCGGGUgCacuacugGCCGCGA-CCGCc -3' miRNA: 3'- ucAUGGCGCCCGgG-------CGGCGCUaGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 10816 | 0.71 | 0.162879 |
Target: 5'- --cGCCGCGucuuGGCCCGCCGCgccGAUaCCAg -3' miRNA: 3'- ucaUGGCGC----CCGGGCGGCG---CUA-GGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 24704 | 0.71 | 0.176019 |
Target: 5'- --gGCCGCGcG-CCGCCGCGA-CCGCa -3' miRNA: 3'- ucaUGGCGCcCgGGCGGCGCUaGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 2834 | 0.7 | 0.185296 |
Target: 5'- --cGCCGCcGaGCUCGCCGCGGccgCCGCg -3' miRNA: 3'- ucaUGGCGcC-CGGGCGGCGCUa--GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 44375 | 0.7 | 0.187203 |
Target: 5'- cGGUGCC-CGGGCgaucgucggcgcggaUCGCCGCGucgagCCGCg -3' miRNA: 3'- -UCAUGGcGCCCG---------------GGCGGCGCua---GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 5752 | 0.7 | 0.190095 |
Target: 5'- --cGCuCGCGGGCaCCGCCGcCGAgaucgcUCCAg -3' miRNA: 3'- ucaUG-GCGCCCG-GGCGGC-GCU------AGGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 25533 | 0.7 | 0.199513 |
Target: 5'- cGUGCCGCuguggcucGGCCUggucgccgcccugGCCGCGGUCgGCa -3' miRNA: 3'- uCAUGGCGc-------CCGGG-------------CGGCGCUAGgUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 37566 | 0.69 | 0.226818 |
Target: 5'- --gGCUGC-GGCCCGuaCCGCG-UCCACa -3' miRNA: 3'- ucaUGGCGcCCGGGC--GGCGCuAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 13953 | 0.69 | 0.23253 |
Target: 5'- aGGUGCCGCGugaugucaGCgCCGgCGCGGUCCuCg -3' miRNA: 3'- -UCAUGGCGCc-------CG-GGCgGCGCUAGGuG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 18159 | 0.69 | 0.238362 |
Target: 5'- aGGUgGCCGUGGuGCCCGCCGgGGcgUCGu -3' miRNA: 3'- -UCA-UGGCGCC-CGGGCGGCgCUa-GGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 39892 | 0.68 | 0.250394 |
Target: 5'- --cGCUGCGGGUUgGCCGgacgaCGGUCUACa -3' miRNA: 3'- ucaUGGCGCCCGGgCGGC-----GCUAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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