miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 1650 0.72 0.132061
Target:  5'- --cGCCGCGGG-CCGCCGgGAcgauUCCAa -3'
miRNA:   3'- ucaUGGCGCCCgGGCGGCgCU----AGGUg -5'
18952 5' -62.8 NC_004683.1 + 1765 0.66 0.364993
Target:  5'- --aGCgCGCcGGCCgCGCUGCGAUCguCg -3'
miRNA:   3'- ucaUG-GCGcCCGG-GCGGCGCUAGguG- -5'
18952 5' -62.8 NC_004683.1 + 2151 0.66 0.33324
Target:  5'- cGUGCUgGCGGGCCUGggGUGGUCCc- -3'
miRNA:   3'- uCAUGG-CGCCCGGGCggCGCUAGGug -5'
18952 5' -62.8 NC_004683.1 + 2180 0.71 0.162457
Target:  5'- -uUGCCGCGGGUgCacuacugGCCGCGA-CCGCc -3'
miRNA:   3'- ucAUGGCGCCCGgG-------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 2834 0.7 0.185296
Target:  5'- --cGCCGCcGaGCUCGCCGCGGccgCCGCg -3'
miRNA:   3'- ucaUGGCGcC-CGGGCGGCGCUa--GGUG- -5'
18952 5' -62.8 NC_004683.1 + 4734 0.66 0.364993
Target:  5'- -cUACuCGCaGGCCCgcaaccggGCCGacgaGGUCCACg -3'
miRNA:   3'- ucAUG-GCGcCCGGG--------CGGCg---CUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 4869 0.67 0.28881
Target:  5'- cGU-CCGUGGGCuuGUCcagcucgGCGAUCUGCu -3'
miRNA:   3'- uCAuGGCGCCCGggCGG-------CGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 5752 0.7 0.190095
Target:  5'- --cGCuCGCGGGCaCCGCCGcCGAgaucgcUCCAg -3'
miRNA:   3'- ucaUG-GCGCCCG-GGCGGC-GCU------AGGUg -5'
18952 5' -62.8 NC_004683.1 + 5907 0.67 0.282663
Target:  5'- cGGUGCCGCGcGGCgaGCUGCucguaGA-CCGCg -3'
miRNA:   3'- -UCAUGGCGC-CCGggCGGCG-----CUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 6021 0.68 0.256596
Target:  5'- --aGCUGggaGGGCUCGCCGUugccgaucguGGUCCACa -3'
miRNA:   3'- ucaUGGCg--CCCGGGCGGCG----------CUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 8378 0.66 0.364174
Target:  5'- --gACgGUGaucGGCCCcgcgcggGCCGCGAUCCAg -3'
miRNA:   3'- ucaUGgCGC---CCGGG-------CGGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 10498 0.67 0.282663
Target:  5'- -aUGCUGCGGGCCgGCUuCGcgCCGa -3'
miRNA:   3'- ucAUGGCGCCCGGgCGGcGCuaGGUg -5'
18952 5' -62.8 NC_004683.1 + 10816 0.71 0.162879
Target:  5'- --cGCCGCGucuuGGCCCGCCGCgccGAUaCCAg -3'
miRNA:   3'- ucaUGGCGC----CCGGGCGGCG---CUA-GGUg -5'
18952 5' -62.8 NC_004683.1 + 12644 0.71 0.158699
Target:  5'- cGGcGCCGCugcuGGGCCCGCUgucgGCGAUCaGCg -3'
miRNA:   3'- -UCaUGGCG----CCCGGGCGG----CGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 12728 0.67 0.310785
Target:  5'- --cGCCgacaGCGGGCCCagcagcggcGCCGCGG-CCAg -3'
miRNA:   3'- ucaUGG----CGCCCGGG---------CGGCGCUaGGUg -5'
18952 5' -62.8 NC_004683.1 + 13496 0.66 0.364993
Target:  5'- gGGUGuuGagcgcgaaCGGGgCCGCCuGCGggCCACc -3'
miRNA:   3'- -UCAUggC--------GCCCgGGCGG-CGCuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 13953 0.69 0.23253
Target:  5'- aGGUGCCGCGugaugucaGCgCCGgCGCGGUCCuCg -3'
miRNA:   3'- -UCAUGGCGCc-------CG-GGCgGCGCUAGGuG- -5'
18952 5' -62.8 NC_004683.1 + 15617 0.78 0.05394
Target:  5'- --gGCCGCGGGCacgCCGCUGCGGagguaUCCACu -3'
miRNA:   3'- ucaUGGCGCCCG---GGCGGCGCU-----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 16074 0.66 0.340985
Target:  5'- cGUugCGCGGGUCggUGCC-CGAugccUCCAUg -3'
miRNA:   3'- uCAugGCGCCCGG--GCGGcGCU----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 18159 0.69 0.238362
Target:  5'- aGGUgGCCGUGGuGCCCGCCGgGGcgUCGu -3'
miRNA:   3'- -UCA-UGGCGCC-CGGGCGGCgCUa-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.