miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 20243 0.75 0.081416
Target:  5'- --gGCCGCGGGCCCGaUCGUGcacgCCACc -3'
miRNA:   3'- ucaUGGCGCCCGGGC-GGCGCua--GGUG- -5'
18952 5' -62.8 NC_004683.1 + 20493 0.66 0.353645
Target:  5'- cGGUGCCGCcguuggccgccccGGGUgCGCCGCcagcugccagugcaGAUCCc- -3'
miRNA:   3'- -UCAUGGCG-------------CCCGgGCGGCG--------------CUAGGug -5'
18952 5' -62.8 NC_004683.1 + 21134 0.66 0.33324
Target:  5'- -aUGCCGCGcugcuGGUCCcgaacaucccgGCCGCGGaCCACg -3'
miRNA:   3'- ucAUGGCGC-----CCGGG-----------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 22193 0.67 0.325625
Target:  5'- gGGUugCGCGGGgCgGgCGaCGAgccgCCACc -3'
miRNA:   3'- -UCAugGCGCCCgGgCgGC-GCUa---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 24436 0.71 0.154616
Target:  5'- --gACCGCGuGGCCUGCgGCGAcgagUCgGCg -3'
miRNA:   3'- ucaUGGCGC-CCGGGCGgCGCU----AGgUG- -5'
18952 5' -62.8 NC_004683.1 + 24704 0.71 0.176019
Target:  5'- --gGCCGCGcG-CCGCCGCGA-CCGCa -3'
miRNA:   3'- ucaUGGCGCcCgGGCGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 25533 0.7 0.199513
Target:  5'- cGUGCCGCuguggcucGGCCUggucgccgcccugGCCGCGGUCgGCa -3'
miRNA:   3'- uCAUGGCGc-------CCGGG-------------CGGCGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 25992 0.67 0.317399
Target:  5'- -uUACCGCGGcgaucucGCUgGCCGCGuUCCuGCg -3'
miRNA:   3'- ucAUGGCGCC-------CGGgCGGCGCuAGG-UG- -5'
18952 5' -62.8 NC_004683.1 + 26433 0.67 0.310785
Target:  5'- cGGUGCCGCcgaguuGGCCgCagugcacaCCGCGAUCCAg -3'
miRNA:   3'- -UCAUGGCGc-----CCGG-Gc-------GGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 28417 0.67 0.325625
Target:  5'- --aGCUGCGGGCgC-UCGCGGUCUAUc -3'
miRNA:   3'- ucaUGGCGCCCGgGcGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 32789 0.68 0.269375
Target:  5'- ---gUCGCGGGCcagCCGgCGCGAgcugCCACu -3'
miRNA:   3'- ucauGGCGCCCG---GGCgGCGCUa---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 36286 0.68 0.262922
Target:  5'- gAGUuCCGCGGaGaCCUGCCGUc-UCCGCu -3'
miRNA:   3'- -UCAuGGCGCC-C-GGGCGGCGcuAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 37566 0.69 0.226818
Target:  5'- --gGCUGC-GGCCCGuaCCGCG-UCCACa -3'
miRNA:   3'- ucaUGGCGcCCGGGC--GGCGCuAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 39892 0.68 0.250394
Target:  5'- --cGCUGCGGGUUgGCCGgacgaCGGUCUACa -3'
miRNA:   3'- ucaUGGCGCCCGGgCGGC-----GCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 42391 0.68 0.269375
Target:  5'- --cACgGCGaacacCCaCGCCGCGAUCCACa -3'
miRNA:   3'- ucaUGgCGCcc---GG-GCGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 42702 0.66 0.340985
Target:  5'- ---gUCGCGGGCgUCGUCGCGGUCg-- -3'
miRNA:   3'- ucauGGCGCCCG-GGCGGCGCUAGgug -5'
18952 5' -62.8 NC_004683.1 + 43031 0.66 0.372419
Target:  5'- --aGCCuCGGccuugcgccacauGCCCGUCGCGGUCgGCu -3'
miRNA:   3'- ucaUGGcGCC-------------CGGGCGGCGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 44375 0.7 0.187203
Target:  5'- cGGUGCC-CGGGCgaucgucggcgcggaUCGCCGCGucgagCCGCg -3'
miRNA:   3'- -UCAUGGcGCCCG---------------GGCGGCGCua---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 44784 0.67 0.310785
Target:  5'- --gGCgGCGGGCCgCGugcCCGCGAU-CGCg -3'
miRNA:   3'- ucaUGgCGCCCGG-GC---GGCGCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 45636 0.68 0.250394
Target:  5'- --gACCGUGGGCCagagguugugguUGUCGCGGcgCCGCu -3'
miRNA:   3'- ucaUGGCGCCCGG------------GCGGCGCUa-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.