miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 56685 0.68 0.250394
Target:  5'- cGUACC-CGcGGCCCGCgGUGGUgCUGCc -3'
miRNA:   3'- uCAUGGcGC-CCGGGCGgCGCUA-GGUG- -5'
18952 5' -62.8 NC_004683.1 + 53707 0.68 0.256596
Target:  5'- aGGUcGCgGCGGGCCUGaUCGCG--CCGCa -3'
miRNA:   3'- -UCA-UGgCGCCCGGGC-GGCGCuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 53621 0.75 0.090759
Target:  5'- --aGCUGCGgcgcgaucaGGCCCGCCGCGAccuggCCGCg -3'
miRNA:   3'- ucaUGGCGC---------CCGGGCGGCGCUa----GGUG- -5'
18952 5' -62.8 NC_004683.1 + 52952 0.67 0.325625
Target:  5'- cAGcGCUGCaGGGUUCGCCGCuGGaucUCCAUg -3'
miRNA:   3'- -UCaUGGCG-CCCGGGCGGCG-CU---AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 52616 0.71 0.154616
Target:  5'- gAGUACUGCGGGCCgUGCCaGCacguGUUCACc -3'
miRNA:   3'- -UCAUGGCGCCCGG-GCGG-CGc---UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 49062 0.67 0.30356
Target:  5'- --cGCgGCGGGCCCGCgGUacuuUCCGg -3'
miRNA:   3'- ucaUGgCGCCCGGGCGgCGcu--AGGUg -5'
18952 5' -62.8 NC_004683.1 + 48985 1.09 0.000205
Target:  5'- aAGUACCGCGGGCCCGCCGCGAUCCACg -3'
miRNA:   3'- -UCAUGGCGCCCGGGCGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 48694 0.73 0.121957
Target:  5'- gAGU-CCGCGGGCCCaGUCGgGGUgCAUc -3'
miRNA:   3'- -UCAuGGCGCCCGGG-CGGCgCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 47501 0.67 0.30356
Target:  5'- --gGCCuuGCGcuGCCgCGCCGCGAcaUCCGCg -3'
miRNA:   3'- ucaUGG--CGCc-CGG-GCGGCGCU--AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 46638 0.67 0.325625
Target:  5'- cAGUACCGCucgauGCCgGCC-CGgAUCCGCg -3'
miRNA:   3'- -UCAUGGCGcc---CGGgCGGcGC-UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 46368 0.66 0.356862
Target:  5'- aAGcUGCCggaGCGGGCCCcgugggGCCGCua-CCGCg -3'
miRNA:   3'- -UC-AUGG---CGCCCGGG------CGGCGcuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 45636 0.68 0.250394
Target:  5'- --gACCGUGGGCCagagguugugguUGUCGCGGcgCCGCu -3'
miRNA:   3'- ucaUGGCGCCCGG------------GCGGCGCUa-GGUG- -5'
18952 5' -62.8 NC_004683.1 + 44784 0.67 0.310785
Target:  5'- --gGCgGCGGGCCgCGugcCCGCGAU-CGCg -3'
miRNA:   3'- ucaUGgCGCCCGG-GC---GGCGCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 44375 0.7 0.187203
Target:  5'- cGGUGCC-CGGGCgaucgucggcgcggaUCGCCGCGucgagCCGCg -3'
miRNA:   3'- -UCAUGGcGCCCG---------------GGCGGCGCua---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 43031 0.66 0.372419
Target:  5'- --aGCCuCGGccuugcgccacauGCCCGUCGCGGUCgGCu -3'
miRNA:   3'- ucaUGGcGCC-------------CGGGCGGCGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 42702 0.66 0.340985
Target:  5'- ---gUCGCGGGCgUCGUCGCGGUCg-- -3'
miRNA:   3'- ucauGGCGCCCG-GGCGGCGCUAGgug -5'
18952 5' -62.8 NC_004683.1 + 42391 0.68 0.269375
Target:  5'- --cACgGCGaacacCCaCGCCGCGAUCCACa -3'
miRNA:   3'- ucaUGgCGCcc---GG-GCGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 39892 0.68 0.250394
Target:  5'- --cGCUGCGGGUUgGCCGgacgaCGGUCUACa -3'
miRNA:   3'- ucaUGGCGCCCGGgCGGC-----GCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 37566 0.69 0.226818
Target:  5'- --gGCUGC-GGCCCGuaCCGCG-UCCACa -3'
miRNA:   3'- ucaUGGCGcCCGGGC--GGCGCuAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 36286 0.68 0.262922
Target:  5'- gAGUuCCGCGGaGaCCUGCCGUc-UCCGCu -3'
miRNA:   3'- -UCAuGGCGCC-C-GGGCGGCGcuAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.