miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 48985 1.09 0.000205
Target:  5'- aAGUACCGCGGGCCCGCCGCGAUCCACg -3'
miRNA:   3'- -UCAUGGCGCCCGGGCGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 26433 0.67 0.310785
Target:  5'- cGGUGCCGCcgaguuGGCCgCagugcacaCCGCGAUCCAg -3'
miRNA:   3'- -UCAUGGCGc-----CCGG-Gc-------GGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 25992 0.67 0.317399
Target:  5'- -uUACCGCGGcgaucucGCUgGCCGCGuUCCuGCg -3'
miRNA:   3'- ucAUGGCGCC-------CGGgCGGCGCuAGG-UG- -5'
18952 5' -62.8 NC_004683.1 + 22193 0.67 0.325625
Target:  5'- gGGUugCGCGGGgCgGgCGaCGAgccgCCACc -3'
miRNA:   3'- -UCAugGCGCCCgGgCgGC-GCUa---GGUG- -5'
18952 5' -62.8 NC_004683.1 + 2151 0.66 0.33324
Target:  5'- cGUGCUgGCGGGCCUGggGUGGUCCc- -3'
miRNA:   3'- uCAUGG-CGCCCGGGCggCGCUAGGug -5'
18952 5' -62.8 NC_004683.1 + 21134 0.66 0.33324
Target:  5'- -aUGCCGCGcugcuGGUCCcgaacaucccgGCCGCGGaCCACg -3'
miRNA:   3'- ucAUGGCGC-----CCGGG-----------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 46368 0.66 0.356862
Target:  5'- aAGcUGCCggaGCGGGCCCcgugggGCCGCua-CCGCg -3'
miRNA:   3'- -UC-AUGG---CGCCCGGG------CGGCGcuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 8378 0.66 0.364174
Target:  5'- --gACgGUGaucGGCCCcgcgcggGCCGCGAUCCAg -3'
miRNA:   3'- ucaUGgCGC---CCGGG-------CGGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 4734 0.66 0.364993
Target:  5'- -cUACuCGCaGGCCCgcaaccggGCCGacgaGGUCCACg -3'
miRNA:   3'- ucAUG-GCGcCCGGG--------CGGCg---CUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 44784 0.67 0.310785
Target:  5'- --gGCgGCGGGCCgCGugcCCGCGAU-CGCg -3'
miRNA:   3'- ucaUGgCGCCCGG-GC---GGCGCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 10498 0.67 0.282663
Target:  5'- -aUGCUGCGGGCCgGCUuCGcgCCGa -3'
miRNA:   3'- ucAUGGCGCCCGGgCGGcGCuaGGUg -5'
18952 5' -62.8 NC_004683.1 + 39892 0.68 0.250394
Target:  5'- --cGCUGCGGGUUgGCCGgacgaCGGUCUACa -3'
miRNA:   3'- ucaUGGCGCCCGGgCGGC-----GCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 15617 0.78 0.05394
Target:  5'- --gGCCGCGGGCacgCCGCUGCGGagguaUCCACu -3'
miRNA:   3'- ucaUGGCGCCCG---GGCGGCGCU-----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 53621 0.75 0.090759
Target:  5'- --aGCUGCGgcgcgaucaGGCCCGCCGCGAccuggCCGCg -3'
miRNA:   3'- ucaUGGCGC---------CCGGGCGGCGCUa----GGUG- -5'
18952 5' -62.8 NC_004683.1 + 52616 0.71 0.154616
Target:  5'- gAGUACUGCGGGCCgUGCCaGCacguGUUCACc -3'
miRNA:   3'- -UCAUGGCGCCCGG-GCGG-CGc---UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 12644 0.71 0.158699
Target:  5'- cGGcGCCGCugcuGGGCCCGCUgucgGCGAUCaGCg -3'
miRNA:   3'- -UCaUGGCG----CCCGGGCGG----CGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 2180 0.71 0.162457
Target:  5'- -uUGCCGCGGGUgCacuacugGCCGCGA-CCGCc -3'
miRNA:   3'- ucAUGGCGCCCGgG-------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 24704 0.71 0.176019
Target:  5'- --gGCCGCGcG-CCGCCGCGA-CCGCa -3'
miRNA:   3'- ucaUGGCGCcCgGGCGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 5752 0.7 0.190095
Target:  5'- --cGCuCGCGGGCaCCGCCGcCGAgaucgcUCCAg -3'
miRNA:   3'- ucaUG-GCGCCCG-GGCGGC-GCU------AGGUg -5'
18952 5' -62.8 NC_004683.1 + 25533 0.7 0.199513
Target:  5'- cGUGCCGCuguggcucGGCCUggucgccgcccugGCCGCGGUCgGCa -3'
miRNA:   3'- uCAUGGCGc-------CCGGG-------------CGGCGCUAGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.