Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18952 | 5' | -62.8 | NC_004683.1 | + | 53707 | 0.68 | 0.256596 |
Target: 5'- aGGUcGCgGCGGGCCUGaUCGCG--CCGCa -3' miRNA: 3'- -UCA-UGgCGCCCGGGC-GGCGCuaGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 6021 | 0.68 | 0.256596 |
Target: 5'- --aGCUGggaGGGCUCGCCGUugccgaucguGGUCCACa -3' miRNA: 3'- ucaUGGCg--CCCGGGCGGCG----------CUAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 36286 | 0.68 | 0.262922 |
Target: 5'- gAGUuCCGCGGaGaCCUGCCGUc-UCCGCu -3' miRNA: 3'- -UCAuGGCGCC-C-GGGCGGCGcuAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 42391 | 0.68 | 0.269375 |
Target: 5'- --cACgGCGaacacCCaCGCCGCGAUCCACa -3' miRNA: 3'- ucaUGgCGCcc---GG-GCGGCGCUAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 32789 | 0.68 | 0.269375 |
Target: 5'- ---gUCGCGGGCcagCCGgCGCGAgcugCCACu -3' miRNA: 3'- ucauGGCGCCCG---GGCgGCGCUa---GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 5907 | 0.67 | 0.282663 |
Target: 5'- cGGUGCCGCGcGGCgaGCUGCucguaGA-CCGCg -3' miRNA: 3'- -UCAUGGCGC-CCGggCGGCG-----CUaGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 4869 | 0.67 | 0.28881 |
Target: 5'- cGU-CCGUGGGCuuGUCcagcucgGCGAUCUGCu -3' miRNA: 3'- uCAuGGCGCCCGggCGG-------CGCUAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 49062 | 0.67 | 0.30356 |
Target: 5'- --cGCgGCGGGCCCGCgGUacuuUCCGg -3' miRNA: 3'- ucaUGgCGCCCGGGCGgCGcu--AGGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 47501 | 0.67 | 0.30356 |
Target: 5'- --gGCCuuGCGcuGCCgCGCCGCGAcaUCCGCg -3' miRNA: 3'- ucaUGG--CGCc-CGG-GCGGCGCU--AGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 45636 | 0.68 | 0.250394 |
Target: 5'- --gACCGUGGGCCagagguugugguUGUCGCGGcgCCGCu -3' miRNA: 3'- ucaUGGCGCCCGG------------GCGGCGCUa-GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 56685 | 0.68 | 0.250394 |
Target: 5'- cGUACC-CGcGGCCCGCgGUGGUgCUGCc -3' miRNA: 3'- uCAUGGcGC-CCGGGCGgCGCUA-GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 18159 | 0.69 | 0.238362 |
Target: 5'- aGGUgGCCGUGGuGCCCGCCGgGGcgUCGu -3' miRNA: 3'- -UCA-UGGCGCC-CGGGCGGCgCUa-GGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 48694 | 0.73 | 0.121957 |
Target: 5'- gAGU-CCGCGGGCCCaGUCGgGGUgCAUc -3' miRNA: 3'- -UCAuGGCGCCCGGG-CGGCgCUAgGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 1650 | 0.72 | 0.132061 |
Target: 5'- --cGCCGCGGG-CCGCCGgGAcgauUCCAa -3' miRNA: 3'- ucaUGGCGCCCgGGCGGCgCU----AGGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 24436 | 0.71 | 0.154616 |
Target: 5'- --gACCGCGuGGCCUGCgGCGAcgagUCgGCg -3' miRNA: 3'- ucaUGGCGC-CCGGGCGgCGCU----AGgUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 10816 | 0.71 | 0.162879 |
Target: 5'- --cGCCGCGucuuGGCCCGCCGCgccGAUaCCAg -3' miRNA: 3'- ucaUGGCGC----CCGGGCGGCG---CUA-GGUg -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 2834 | 0.7 | 0.185296 |
Target: 5'- --cGCCGCcGaGCUCGCCGCGGccgCCGCg -3' miRNA: 3'- ucaUGGCGcC-CGGGCGGCGCUa--GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 44375 | 0.7 | 0.187203 |
Target: 5'- cGGUGCC-CGGGCgaucgucggcgcggaUCGCCGCGucgagCCGCg -3' miRNA: 3'- -UCAUGGcGCCCG---------------GGCGGCGCua---GGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 37566 | 0.69 | 0.226818 |
Target: 5'- --gGCUGC-GGCCCGuaCCGCG-UCCACa -3' miRNA: 3'- ucaUGGCGcCCGGGC--GGCGCuAGGUG- -5' |
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18952 | 5' | -62.8 | NC_004683.1 | + | 13953 | 0.69 | 0.23253 |
Target: 5'- aGGUGCCGCGugaugucaGCgCCGgCGCGGUCCuCg -3' miRNA: 3'- -UCAUGGCGCc-------CG-GGCgGCGCUAGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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