miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18952 5' -62.8 NC_004683.1 + 12728 0.67 0.310785
Target:  5'- --cGCCgacaGCGGGCCCagcagcggcGCCGCGG-CCAg -3'
miRNA:   3'- ucaUGG----CGCCCGGG---------CGGCGCUaGGUg -5'
18952 5' -62.8 NC_004683.1 + 20493 0.66 0.353645
Target:  5'- cGGUGCCGCcguuggccgccccGGGUgCGCCGCcagcugccagugcaGAUCCc- -3'
miRNA:   3'- -UCAUGGCG-------------CCCGgGCGGCG--------------CUAGGug -5'
18952 5' -62.8 NC_004683.1 + 42391 0.68 0.269375
Target:  5'- --cACgGCGaacacCCaCGCCGCGAUCCACa -3'
miRNA:   3'- ucaUGgCGCcc---GG-GCGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 43031 0.66 0.372419
Target:  5'- --aGCCuCGGccuugcgccacauGCCCGUCGCGGUCgGCu -3'
miRNA:   3'- ucaUGGcGCC-------------CGGGCGGCGCUAGgUG- -5'
18952 5' -62.8 NC_004683.1 + 52952 0.67 0.325625
Target:  5'- cAGcGCUGCaGGGUUCGCCGCuGGaucUCCAUg -3'
miRNA:   3'- -UCaUGGCG-CCCGGGCGGCG-CU---AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 46638 0.67 0.325625
Target:  5'- cAGUACCGCucgauGCCgGCC-CGgAUCCGCg -3'
miRNA:   3'- -UCAUGGCGcc---CGGgCGGcGC-UAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 28417 0.67 0.325625
Target:  5'- --aGCUGCGGGCgC-UCGCGGUCUAUc -3'
miRNA:   3'- ucaUGGCGCCCGgGcGGCGCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 42702 0.66 0.340985
Target:  5'- ---gUCGCGGGCgUCGUCGCGGUCg-- -3'
miRNA:   3'- ucauGGCGCCCG-GGCGGCGCUAGgug -5'
18952 5' -62.8 NC_004683.1 + 16074 0.66 0.340985
Target:  5'- cGUugCGCGGGUCggUGCC-CGAugccUCCAUg -3'
miRNA:   3'- uCAugGCGCCCGG--GCGGcGCU----AGGUG- -5'
18952 5' -62.8 NC_004683.1 + 13496 0.66 0.364993
Target:  5'- gGGUGuuGagcgcgaaCGGGgCCGCCuGCGggCCACc -3'
miRNA:   3'- -UCAUggC--------GCCCgGGCGG-CGCuaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 1765 0.66 0.364993
Target:  5'- --aGCgCGCcGGCCgCGCUGCGAUCguCg -3'
miRNA:   3'- ucaUG-GCGcCCGG-GCGGCGCUAGguG- -5'
18952 5' -62.8 NC_004683.1 + 2180 0.71 0.162457
Target:  5'- -uUGCCGCGGGUgCacuacugGCCGCGA-CCGCc -3'
miRNA:   3'- ucAUGGCGCCCGgG-------CGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 53621 0.75 0.090759
Target:  5'- --aGCUGCGgcgcgaucaGGCCCGCCGCGAccuggCCGCg -3'
miRNA:   3'- ucaUGGCGC---------CCGGGCGGCGCUa----GGUG- -5'
18952 5' -62.8 NC_004683.1 + 24704 0.71 0.176019
Target:  5'- --gGCCGCGcG-CCGCCGCGA-CCGCa -3'
miRNA:   3'- ucaUGGCGCcCgGGCGGCGCUaGGUG- -5'
18952 5' -62.8 NC_004683.1 + 39892 0.68 0.250394
Target:  5'- --cGCUGCGGGUUgGCCGgacgaCGGUCUACa -3'
miRNA:   3'- ucaUGGCGCCCGGgCGGC-----GCUAGGUG- -5'
18952 5' -62.8 NC_004683.1 + 10498 0.67 0.282663
Target:  5'- -aUGCUGCGGGCCgGCUuCGcgCCGa -3'
miRNA:   3'- ucAUGGCGCCCGGgCGGcGCuaGGUg -5'
18952 5' -62.8 NC_004683.1 + 44784 0.67 0.310785
Target:  5'- --gGCgGCGGGCCgCGugcCCGCGAU-CGCg -3'
miRNA:   3'- ucaUGgCGCCCGG-GC---GGCGCUAgGUG- -5'
18952 5' -62.8 NC_004683.1 + 26433 0.67 0.310785
Target:  5'- cGGUGCCGCcgaguuGGCCgCagugcacaCCGCGAUCCAg -3'
miRNA:   3'- -UCAUGGCGc-----CCGG-Gc-------GGCGCUAGGUg -5'
18952 5' -62.8 NC_004683.1 + 25992 0.67 0.317399
Target:  5'- -uUACCGCGGcgaucucGCUgGCCGCGuUCCuGCg -3'
miRNA:   3'- ucAUGGCGCC-------CGGgCGGCGCuAGG-UG- -5'
18952 5' -62.8 NC_004683.1 + 22193 0.67 0.325625
Target:  5'- gGGUugCGCGGGgCgGgCGaCGAgccgCCACc -3'
miRNA:   3'- -UCAugGCGCCCgGgCgGC-GCUa---GGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.