Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18953 | 3' | -54.7 | NC_004683.1 | + | 1928 | 0.66 | 0.728242 |
Target: 5'- --gGCCAgagGCuUCGAGCCCuGGUGgCGc -3' miRNA: 3'- ucgCGGUaa-UGuAGUUCGGG-CCAC-GC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 4830 | 0.67 | 0.673765 |
Target: 5'- gGGCGUgGaccuCGUC-GGCCCGGUuGCGg -3' miRNA: 3'- -UCGCGgUaau-GUAGuUCGGGCCA-CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 4954 | 0.66 | 0.717495 |
Target: 5'- cGGCGCaugcGCGUCGAGgCCGGUuccucGCa -3' miRNA: 3'- -UCGCGguaaUGUAGUUCgGGCCA-----CGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 8629 | 0.72 | 0.363919 |
Target: 5'- -aCGCCAcgGCgAUCAGG-CCGGUGCGg -3' miRNA: 3'- ucGCGGUaaUG-UAGUUCgGGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 9362 | 0.68 | 0.629389 |
Target: 5'- gGGCGC----ACGUCcAGCCCGGgcaUGCGc -3' miRNA: 3'- -UCGCGguaaUGUAGuUCGGGCC---ACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 12242 | 0.67 | 0.662704 |
Target: 5'- gAGCGCCcg-GCGUgcCGAuGCCCGGcGCu -3' miRNA: 3'- -UCGCGGuaaUGUA--GUU-CGGGCCaCGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 12327 | 0.66 | 0.749429 |
Target: 5'- cAGCGCCgg-GCAUCGGcacGCCgGGcGCu -3' miRNA: 3'- -UCGCGGuaaUGUAGUU---CGGgCCaCGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 16097 | 0.66 | 0.749429 |
Target: 5'- cGGCGUCAU--CGUCGAaaccGCCgGcGUGCGg -3' miRNA: 3'- -UCGCGGUAauGUAGUU----CGGgC-CACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 17169 | 0.67 | 0.673765 |
Target: 5'- cAGCGCCGcuccgACAU-GGGCCCGaUGCa -3' miRNA: 3'- -UCGCGGUaa---UGUAgUUCGGGCcACGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 18289 | 0.72 | 0.363919 |
Target: 5'- cGCGUCGUgcUGCAgUCGGGCCCGGagacggGCGc -3' miRNA: 3'- uCGCGGUA--AUGU-AGUUCGGGCCa-----CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 21057 | 0.66 | 0.749429 |
Target: 5'- cGGUGaCCAggGCAUCAgaugaccguguAGCCCGcUGCc -3' miRNA: 3'- -UCGC-GGUaaUGUAGU-----------UCGGGCcACGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 23055 | 0.67 | 0.695756 |
Target: 5'- cGGUGUCGgccUGC-UCGgcGGCCUGGUGCu -3' miRNA: 3'- -UCGCGGUa--AUGuAGU--UCGGGCCACGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 23927 | 0.68 | 0.607174 |
Target: 5'- aAGuCGCCGUcgACGUCGAGCuuGGaGUa -3' miRNA: 3'- -UC-GCGGUAa-UGUAGUUCGggCCaCGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 24704 | 0.67 | 0.673765 |
Target: 5'- gGGCGCCGgugACGUCGAgguaggagaauGCCgGGUcGCc -3' miRNA: 3'- -UCGCGGUaa-UGUAGUU-----------CGGgCCA-CGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 24766 | 0.67 | 0.662704 |
Target: 5'- cGCgGCCAUggccucgaugACGUCGGGgUUGGUGCGc -3' miRNA: 3'- uCG-CGGUAa---------UGUAGUUCgGGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 25116 | 0.67 | 0.684786 |
Target: 5'- cGGCGgCGUUGCcgGUCcuGGCcgccgucaCCGGUGCGg -3' miRNA: 3'- -UCGCgGUAAUG--UAGu-UCG--------GGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 25364 | 0.66 | 0.717495 |
Target: 5'- uGCGCCug-----CAGGCCCGGcagcGCGg -3' miRNA: 3'- uCGCGGuaauguaGUUCGGGCCa---CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 25451 | 0.68 | 0.611612 |
Target: 5'- cAGCGCCGgaaugcggcgaugACGUCGuAGCcgaccugaaugCCGGUGCGc -3' miRNA: 3'- -UCGCGGUaa-----------UGUAGU-UCG-----------GGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 26398 | 0.68 | 0.629389 |
Target: 5'- cAGCGCCG----GUCGAuuuccuuguauGCCuCGGUGCGa -3' miRNA: 3'- -UCGCGGUaaugUAGUU-----------CGG-GCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 30535 | 0.68 | 0.585046 |
Target: 5'- uGGCgGCCGUUACGuUCGGGUgCCGG-GCa -3' miRNA: 3'- -UCG-CGGUAAUGU-AGUUCG-GGCCaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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