miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18953 3' -54.7 NC_004683.1 + 26398 0.68 0.629389
Target:  5'- cAGCGCCG----GUCGAuuuccuuguauGCCuCGGUGCGa -3'
miRNA:   3'- -UCGCGGUaaugUAGUU-----------CGG-GCCACGC- -5'
18953 3' -54.7 NC_004683.1 + 9362 0.68 0.629389
Target:  5'- gGGCGC----ACGUCcAGCCCGGgcaUGCGc -3'
miRNA:   3'- -UCGCGguaaUGUAGuUCGGGCC---ACGC- -5'
18953 3' -54.7 NC_004683.1 + 44398 0.68 0.616054
Target:  5'- gAGCGCCugcgacugugACAggUCGGuGCCCGG-GCGa -3'
miRNA:   3'- -UCGCGGuaa-------UGU--AGUU-CGGGCCaCGC- -5'
18953 3' -54.7 NC_004683.1 + 25451 0.68 0.611612
Target:  5'- cAGCGCCGgaaugcggcgaugACGUCGuAGCcgaccugaaugCCGGUGCGc -3'
miRNA:   3'- -UCGCGGUaa-----------UGUAGU-UCG-----------GGCCACGC- -5'
18953 3' -54.7 NC_004683.1 + 23927 0.68 0.607174
Target:  5'- aAGuCGCCGUcgACGUCGAGCuuGGaGUa -3'
miRNA:   3'- -UC-GCGGUAa-UGUAGUUCGggCCaCGc -5'
18953 3' -54.7 NC_004683.1 + 44542 0.68 0.607174
Target:  5'- --gGCCAUcugcACGUCGGGCgCCGGcGCGg -3'
miRNA:   3'- ucgCGGUAa---UGUAGUUCG-GGCCaCGC- -5'
18953 3' -54.7 NC_004683.1 + 50758 0.68 0.596094
Target:  5'- uAGCGCCAcaGCAgaccGGCCUGGUGg- -3'
miRNA:   3'- -UCGCGGUaaUGUagu-UCGGGCCACgc -5'
18953 3' -54.7 NC_004683.1 + 30535 0.68 0.585046
Target:  5'- uGGCgGCCGUUACGuUCGGGUgCCGG-GCa -3'
miRNA:   3'- -UCG-CGGUAAUGU-AGUUCG-GGCCaCGc -5'
18953 3' -54.7 NC_004683.1 + 52328 0.69 0.552176
Target:  5'- uGCGCCuuggUGCcgCGccGGCCCGGgucgccgagGCGg -3'
miRNA:   3'- uCGCGGua--AUGuaGU--UCGGGCCa--------CGC- -5'
18953 3' -54.7 NC_004683.1 + 42809 0.69 0.552176
Target:  5'- cGCGCCGgauaccgACAgCGAGcCCCGGUcaGCGu -3'
miRNA:   3'- uCGCGGUaa-----UGUaGUUC-GGGCCA--CGC- -5'
18953 3' -54.7 NC_004683.1 + 40304 0.69 0.552176
Target:  5'- cGGCGCgGgccugcucgGCGUCGuaggcAGCCCGG-GCGa -3'
miRNA:   3'- -UCGCGgUaa-------UGUAGU-----UCGGGCCaCGC- -5'
18953 3' -54.7 NC_004683.1 + 52697 0.69 0.530571
Target:  5'- gAGUGCCGgguacagcugUACGcCAAGCgCGGUGCc -3'
miRNA:   3'- -UCGCGGUa---------AUGUaGUUCGgGCCACGc -5'
18953 3' -54.7 NC_004683.1 + 43845 0.71 0.447795
Target:  5'- cGCGCuCGgu-C-UCGAGCCCGGUGUc -3'
miRNA:   3'- uCGCG-GUaauGuAGUUCGGGCCACGc -5'
18953 3' -54.7 NC_004683.1 + 18289 0.72 0.363919
Target:  5'- cGCGUCGUgcUGCAgUCGGGCCCGGagacggGCGc -3'
miRNA:   3'- uCGCGGUA--AUGU-AGUUCGGGCCa-----CGC- -5'
18953 3' -54.7 NC_004683.1 + 8629 0.72 0.363919
Target:  5'- -aCGCCAcgGCgAUCAGG-CCGGUGCGg -3'
miRNA:   3'- ucGCGGUaaUG-UAGUUCgGGCCACGC- -5'
18953 3' -54.7 NC_004683.1 + 53953 0.73 0.321458
Target:  5'- cAGCGCCAgcggaAUCGGGCCCuucucaucgccggGGUGCa -3'
miRNA:   3'- -UCGCGGUaaug-UAGUUCGGG-------------CCACGc -5'
18953 3' -54.7 NC_004683.1 + 49471 1.08 0.001248
Target:  5'- aAGCGCCAUUACAUCAAGCCCGGUGCGc -3'
miRNA:   3'- -UCGCGGUAAUGUAGUUCGGGCCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.