miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18954	5'	-56.5	NC_004683.1	+	11322	0.66	0.692155
	Target:  5'- aCGGCCAGgaagcgcucgGUCugaucaACCAGcuuugggagGGUGGCUCc -3' miRNA:   3'- -GCUGGUCa---------CAG------UGGUCa--------CCACCGAGc -5'
18954	5'	-56.5	NC_004683.1	+	50091	0.66	0.659832
	Target:  5'- -aACCAG-GUCACCGuUGGUGaGgUCGa -3' miRNA:   3'- gcUGGUCaCAGUGGUcACCAC-CgAGC- -5'
18954	5'	-56.5	NC_004683.1	+	45898	0.67	0.616428
	Target:  5'- aCGGCCAG-GUC-CCAGUGGU---UCGa -3' miRNA:   3'- -GCUGGUCaCAGuGGUCACCAccgAGC- -5'
18954	5'	-56.5	NC_004683.1	+	2120	0.67	0.583981
	Target:  5'- uGGCCA---UCGCCcuGGUGGUGGCgggCGu -3' miRNA:   3'- gCUGGUcacAGUGG--UCACCACCGa--GC- -5'
18954	5'	-56.5	NC_004683.1	+	13022	0.67	0.583981
	Target:  5'- aGACCGGc--CACCGGUGGggcGGCcgUCGa -3' miRNA:   3'- gCUGGUCacaGUGGUCACCa--CCG--AGC- -5'
18954	5'	-56.5	NC_004683.1	+	51474	0.67	0.583981
	Target:  5'- aCGugCGGUGUCGCCc----UGGCUCa -3' miRNA:   3'- -GCugGUCACAGUGGucaccACCGAGc -5'
18954	5'	-56.5	NC_004683.1	+	25134	0.68	0.530781
	Target:  5'- uGGCCGccGUCACCGGUgcgGGUagcggccugcucGGCUCGg -3' miRNA:   3'- gCUGGUcaCAGUGGUCA---CCA------------CCGAGC- -5'
18954	5'	-56.5	NC_004683.1	+	10840	0.69	0.511011
	Target:  5'- uGGCCGGUGUgGCCAcccucggagugaugGGUGGC-CGa -3' miRNA:   3'- gCUGGUCACAgUGGUca------------CCACCGaGC- -5'
18954	5'	-56.5	NC_004683.1	+	14618	0.69	0.489526
	Target:  5'- aCGACUGGcUGaUCACCgacacccgcgaGGUGGUGGC-CGg -3' miRNA:   3'- -GCUGGUC-AC-AGUGG-----------UCACCACCGaGC- -5'
18954	5'	-56.5	NC_004683.1	+	49682	1.09	0.000904
	Target:  5'- cCGACCAGUGUCACCAGUGGUGGCUCGu -3' miRNA:   3'- -GCUGGUCACAGUGGUCACCACCGAGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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