miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18955 3' -52.7 NC_004683.1 + 49922 0.66 0.844624
Target:  5'- --aGCCAUgauCGAucGGACCGcauGCCACGa -3'
miRNA:   3'- uuaCGGUGau-GCU--UCUGGC---UGGUGUg -5'
18955 3' -52.7 NC_004683.1 + 1615 0.66 0.844624
Target:  5'- -uUGCCGucCUcGCGAuacCCGGCCACGCc -3'
miRNA:   3'- uuACGGU--GA-UGCUucuGGCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 26453 0.66 0.844624
Target:  5'- cAGUGCaCACcGCGAuccAGGCCGcCCGC-Cg -3'
miRNA:   3'- -UUACG-GUGaUGCU---UCUGGCuGGUGuG- -5'
18955 3' -52.7 NC_004683.1 + 49560 0.66 0.843732
Target:  5'- cGAUGCCAuCUACGucGGAUucaccaguagcagUGGCCGCAUc -3'
miRNA:   3'- -UUACGGU-GAUGCu-UCUG-------------GCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 49668 0.66 0.835598
Target:  5'- --gGCCGacGCGuGGGCCGACCAguguCACc -3'
miRNA:   3'- uuaCGGUgaUGCuUCUGGCUGGU----GUG- -5'
18955 3' -52.7 NC_004683.1 + 40956 0.66 0.835598
Target:  5'- -uUGCCcgucgGCcACGccGACCuGGCCGCGCg -3'
miRNA:   3'- uuACGG-----UGaUGCuuCUGG-CUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 43136 0.66 0.835598
Target:  5'- cGUGCgGCUGCGuggccGGAUCGACUggcuCACu -3'
miRNA:   3'- uUACGgUGAUGCu----UCUGGCUGGu---GUG- -5'
18955 3' -52.7 NC_004683.1 + 7824 0.66 0.826346
Target:  5'- cGGUGCCgaACUcgACGAAGugCGcauACCAgGCu -3'
miRNA:   3'- -UUACGG--UGA--UGCUUCugGC---UGGUgUG- -5'
18955 3' -52.7 NC_004683.1 + 7422 0.66 0.826346
Target:  5'- -cUGCCACauuccacauCGAcGGGCCGAUCAUGCc -3'
miRNA:   3'- uuACGGUGau-------GCU-UCUGGCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 45696 0.66 0.826346
Target:  5'- uGGUGCUgcacuacccgACUACGGAGGCgaUGGCCugAUg -3'
miRNA:   3'- -UUACGG----------UGAUGCUUCUG--GCUGGugUG- -5'
18955 3' -52.7 NC_004683.1 + 5346 0.66 0.816877
Target:  5'- cGUGCCAUgggccugACcAAGGCCGACgGCGg -3'
miRNA:   3'- uUACGGUGa------UGcUUCUGGCUGgUGUg -5'
18955 3' -52.7 NC_004683.1 + 12827 0.66 0.814958
Target:  5'- --cGCgUACUGCGAuuggguguacugcGGACCGAacgcgccCCGCGCg -3'
miRNA:   3'- uuaCG-GUGAUGCU-------------UCUGGCU-------GGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 41720 0.66 0.807203
Target:  5'- --cGCCAUUGCGAgAGugCcauguucGCCGCGCg -3'
miRNA:   3'- uuaCGGUGAUGCU-UCugGc------UGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 50755 0.66 0.807203
Target:  5'- --cGCCACaGC--AGACCGGCCugGu -3'
miRNA:   3'- uuaCGGUGaUGcuUCUGGCUGGugUg -5'
18955 3' -52.7 NC_004683.1 + 51086 0.66 0.807202
Target:  5'- --gGCCGagcaUGCGAAGuucACCGACUACugGCg -3'
miRNA:   3'- uuaCGGUg---AUGCUUC---UGGCUGGUG--UG- -5'
18955 3' -52.7 NC_004683.1 + 13051 0.66 0.804262
Target:  5'- --aGCCACUcguccgcauuguguGuCGAcagAGACCGGCCAC-Cg -3'
miRNA:   3'- uuaCGGUGA--------------U-GCU---UCUGGCUGGUGuG- -5'
18955 3' -52.7 NC_004683.1 + 48406 0.66 0.797333
Target:  5'- --aGCCACUucuCGGAccGGuuGACCugACg -3'
miRNA:   3'- uuaCGGUGAu--GCUU--CUggCUGGugUG- -5'
18955 3' -52.7 NC_004683.1 + 46371 0.67 0.787282
Target:  5'- -cUGCCGgaGCGGgccccgugGGGCCGcuACCGCGCc -3'
miRNA:   3'- uuACGGUgaUGCU--------UCUGGC--UGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 32512 0.67 0.787282
Target:  5'- --aGCCggACgugGCGcAGACCGGCCGCc- -3'
miRNA:   3'- uuaCGG--UGa--UGCuUCUGGCUGGUGug -5'
18955 3' -52.7 NC_004683.1 + 25625 0.67 0.787282
Target:  5'- --gGCCAggGCGGcgaccAGGCCGAgCCACAg -3'
miRNA:   3'- uuaCGGUgaUGCU-----UCUGGCU-GGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.