miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18955 3' -52.7 NC_004683.1 + 45142 0.67 0.745485
Target:  5'- --gGCCACgcuaucucagcACGGgcuGGCCGACCGCAg -3'
miRNA:   3'- uuaCGGUGa----------UGCUu--CUGGCUGGUGUg -5'
18955 3' -52.7 NC_004683.1 + 42548 0.69 0.679392
Target:  5'- --cGCCGCgcgACGcacaccaugagcGAGGCCGAgCGCGCc -3'
miRNA:   3'- uuaCGGUGa--UGC------------UUCUGGCUgGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 43820 0.68 0.690598
Target:  5'- -uUGCCGgUGCGcugcuGACCucGGCCGCGCu -3'
miRNA:   3'- uuACGGUgAUGCuu---CUGG--CUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 19115 0.68 0.690598
Target:  5'- gGAUGCgCGCgggUGGAGugCGACgGCACc -3'
miRNA:   3'- -UUACG-GUGau-GCUUCugGCUGgUGUG- -5'
18955 3' -52.7 NC_004683.1 + 41657 0.68 0.701744
Target:  5'- cAAUGgCGCU-CGAGGuGCgCGACUACACg -3'
miRNA:   3'- -UUACgGUGAuGCUUC-UG-GCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 1971 0.68 0.712818
Target:  5'- --gGCCGugACGcuGGCCGugCACGCg -3'
miRNA:   3'- uuaCGGUgaUGCuuCUGGCugGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 33372 0.68 0.728178
Target:  5'- gGGUaCCGuCUGCGAAGGCguuugcgcuucccguCGACCACGCc -3'
miRNA:   3'- -UUAcGGU-GAUGCUUCUG---------------GCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 56764 0.68 0.734701
Target:  5'- --gGCCACgacgACGAcGACCGcaGCCGCuACc -3'
miRNA:   3'- uuaCGGUGa---UGCUuCUGGC--UGGUG-UG- -5'
18955 3' -52.7 NC_004683.1 + 23909 0.67 0.745485
Target:  5'- --cGCCGCguagGCGuggcGGCCGACgGCAUc -3'
miRNA:   3'- uuaCGGUGa---UGCuu--CUGGCUGgUGUG- -5'
18955 3' -52.7 NC_004683.1 + 13856 0.69 0.679392
Target:  5'- --gGCCAC--CGAGGACCGcGCCgGCGCu -3'
miRNA:   3'- uuaCGGUGauGCUUCUGGC-UGG-UGUG- -5'
18955 3' -52.7 NC_004683.1 + 53574 0.7 0.611562
Target:  5'- --cGCCGCgGCaGAcGCCGGCCGCACc -3'
miRNA:   3'- uuaCGGUGaUGcUUcUGGCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 51487 0.7 0.58899
Target:  5'- --gGCgUACUACGAcGcgcccACCGACCGCGCg -3'
miRNA:   3'- uuaCG-GUGAUGCUuC-----UGGCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 18446 0.79 0.183528
Target:  5'- cGGUGCCGCUGCcguGACCGACC-CGCu -3'
miRNA:   3'- -UUACGGUGAUGcuuCUGGCUGGuGUG- -5'
18955 3' -52.7 NC_004683.1 + 12283 0.74 0.354596
Target:  5'- --gGCUACUACGAGG-UCGACC-CACa -3'
miRNA:   3'- uuaCGGUGAUGCUUCuGGCUGGuGUG- -5'
18955 3' -52.7 NC_004683.1 + 50693 0.72 0.469348
Target:  5'- uGUGgCGCUACGAGG-UCGACgGCACc -3'
miRNA:   3'- uUACgGUGAUGCUUCuGGCUGgUGUG- -5'
18955 3' -52.7 NC_004683.1 + 46528 0.72 0.469348
Target:  5'- --aGCCACUgGCGGAGAagaCGAUgGCGCg -3'
miRNA:   3'- uuaCGGUGA-UGCUUCUg--GCUGgUGUG- -5'
18955 3' -52.7 NC_004683.1 + 38779 0.72 0.490285
Target:  5'- aGGUGCCGC-GCG-AGACCGuCCugACc -3'
miRNA:   3'- -UUACGGUGaUGCuUCUGGCuGGugUG- -5'
18955 3' -52.7 NC_004683.1 + 46584 0.72 0.499848
Target:  5'- -cUGCCGCUGCuggugccggucGAGGGCCGcgacggcaaggccGCCGCGCc -3'
miRNA:   3'- uuACGGUGAUG-----------CUUCUGGC-------------UGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 51844 0.71 0.511646
Target:  5'- -cUGuUCGC-ACGgcGGCCGACCGCGCu -3'
miRNA:   3'- uuAC-GGUGaUGCuuCUGGCUGGUGUG- -5'
18955 3' -52.7 NC_004683.1 + 16894 0.7 0.56657
Target:  5'- --cGCCGCUGguguCGugcAAGAucaCCGACCACACa -3'
miRNA:   3'- uuaCGGUGAU----GC---UUCU---GGCUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.