miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18956 5' -58.4 NC_004683.1 + 15209 0.66 0.607148
Target:  5'- uGGGcCG-GGAACGUucaaguUCGC-UGCCGCg -3'
miRNA:   3'- -UCCaGCuCCUUGCGc-----AGCGuGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 5372 0.66 0.607148
Target:  5'- cGGU-GAGGAuCGCGgcgUGCGgGuuGCg -3'
miRNA:   3'- uCCAgCUCCUuGCGCa--GCGUgCggCG- -5'
18956 5' -58.4 NC_004683.1 + 25974 0.66 0.602903
Target:  5'- uGGGUCucGGuaugacgauuacCGCGgcgaucUCGCugGCCGCg -3'
miRNA:   3'- -UCCAGcuCCuu----------GCGC------AGCGugCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 44360 0.66 0.596542
Target:  5'- -cGUCGGcgcGGAucgcCGCGUCGa--GCCGCg -3'
miRNA:   3'- ucCAGCU---CCUu---GCGCAGCgugCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 47850 0.66 0.595483
Target:  5'- uGGUCGuGGAugcccccACGCGgaacggugCGUgugACGUCGCu -3'
miRNA:   3'- uCCAGCuCCU-------UGCGCa-------GCG---UGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 35439 0.66 0.595483
Target:  5'- uGGUCGAucGGGuuugucucagucgGCGUGcUGCugGCUGCc -3'
miRNA:   3'- uCCAGCU--CCU-------------UGCGCaGCGugCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 37227 0.66 0.585964
Target:  5'- cGGUCGAGuGGACuuCGUCuucauGUcagACGCCGCc -3'
miRNA:   3'- uCCAGCUC-CUUGc-GCAG-----CG---UGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 35488 0.66 0.575422
Target:  5'- -uGUCGAccucaacgccGAAUGCGcUCGCACGCUGUc -3'
miRNA:   3'- ucCAGCUc---------CUUGCGC-AGCGUGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 8656 0.66 0.575422
Target:  5'- uGGUCGAcguaccGAGUGCGUCGCggaACGCCa- -3'
miRNA:   3'- uCCAGCUc-----CUUGCGCAGCG---UGCGGcg -5'
18956 5' -58.4 NC_004683.1 + 5050 0.66 0.575422
Target:  5'- cGGccgcccugCGAGGAaccggccucgACGCGcaugcgcCGCugGCCGCc -3'
miRNA:   3'- uCCa-------GCUCCU----------UGCGCa------GCGugCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 48599 0.66 0.57437
Target:  5'- cGG-CGAGGAcacugGCGCGgcauugaUCGCAcCGCCa- -3'
miRNA:   3'- uCCaGCUCCU-----UGCGC-------AGCGU-GCGGcg -5'
18956 5' -58.4 NC_004683.1 + 26949 0.66 0.564924
Target:  5'- cAGGcgcgaGAGGGuccGCGCGUaCGCgugaGCGCCGg -3'
miRNA:   3'- -UCCag---CUCCU---UGCGCA-GCG----UGCGGCg -5'
18956 5' -58.4 NC_004683.1 + 48810 0.66 0.564924
Target:  5'- uGGUacgCGAuGGuuCGCGUcggcaagaaacgCGCugGCCGCg -3'
miRNA:   3'- uCCA---GCU-CCuuGCGCA------------GCGugCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 56669 0.66 0.563877
Target:  5'- uGGUCGAGGcgggcaaGGCGCugUGCugGCgGUg -3'
miRNA:   3'- uCCAGCUCC-------UUGCGcaGCGugCGgCG- -5'
18956 5' -58.4 NC_004683.1 + 15609 0.66 0.554477
Target:  5'- aAGaUCGuGGc-CGCGg-GCACGCCGCu -3'
miRNA:   3'- -UCcAGCuCCuuGCGCagCGUGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 24074 0.66 0.554476
Target:  5'- gGGG-CGGGcGGugGCGUgGUgaucGCGCCGa -3'
miRNA:   3'- -UCCaGCUC-CUugCGCAgCG----UGCGGCg -5'
18956 5' -58.4 NC_004683.1 + 39335 0.67 0.544087
Target:  5'- cGGUcCGAccGGAaucACGCcacagCGCAgGCCGCa -3'
miRNA:   3'- uCCA-GCU--CCU---UGCGca---GCGUgCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 51658 0.67 0.543051
Target:  5'- gGGGuUCGuuGGugGCcagGUcagaaacCGCACGCCGCg -3'
miRNA:   3'- -UCC-AGCucCUugCG---CA-------GCGUGCGGCG- -5'
18956 5' -58.4 NC_004683.1 + 18535 0.67 0.533761
Target:  5'- --uUCGGGGAGCGgGUCGguCACGgcagcggcaCCGCg -3'
miRNA:   3'- uccAGCUCCUUGCgCAGC--GUGC---------GGCG- -5'
18956 5' -58.4 NC_004683.1 + 44406 0.67 0.533761
Target:  5'- gAGGUCGAu--ACGCcaccgaagucGUCGCGCGCacaaCGCg -3'
miRNA:   3'- -UCCAGCUccuUGCG----------CAGCGUGCG----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.