Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18957 | 3' | -58.6 | NC_004683.1 | + | 39862 | 0.67 | 0.450492 |
Target: 5'- uGCUGCUgaCGAuuCCC-GAGACGGcGGAUg -3' miRNA: 3'- -UGACGG--GCUu-GGGaCUCUGCCuCCUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 37040 | 0.67 | 0.469987 |
Target: 5'- gGCUGCCCcuugggguACCCcggcGGGGCGGuucGGGCg -3' miRNA: 3'- -UGACGGGcu------UGGGa---CUCUGCCu--CCUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 18296 | 0.68 | 0.403791 |
Target: 5'- uGCUGCaguCGGGCCCgGAGACGGGcgcaucGGCa -3' miRNA: 3'- -UGACGg--GCUUGGGaCUCUGCCUc-----CUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 30018 | 0.68 | 0.403791 |
Target: 5'- gGCUGCCCgccGAGCCC-GAGA-GGuauGGGCc -3' miRNA: 3'- -UGACGGG---CUUGGGaCUCUgCCu--CCUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 50723 | 0.68 | 0.422106 |
Target: 5'- uGCUGUUCGugUCgUG-GugGGAGGACg -3' miRNA: 3'- -UGACGGGCuuGGgACuCugCCUCCUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 52056 | 0.68 | 0.431449 |
Target: 5'- -gUGCCCGAcgcGCCCUGGcugaucgucGACGcGGGaGGCg -3' miRNA: 3'- ugACGGGCU---UGGGACU---------CUGC-CUC-CUG- -5' |
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18957 | 3' | -58.6 | NC_004683.1 | + | 50426 | 1.09 | 0.000515 |
Target: 5'- gACUGCCCGAACCCUGAGACGGAGGACu -3' miRNA: 3'- -UGACGGGCUUGGGACUCUGCCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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