miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 44935 0.66 0.298634
Target:  5'- gGCCaGCGCCUGCCGUCGaaacccggcucacgAaagacgaucugcuguGaGCGCCGAGu -3'
miRNA:   3'- -CGG-CGUGGGCGGCGGU--------------U---------------C-CGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 34154 0.66 0.297935
Target:  5'- uGCCGCuACCgGCUGCCGgaccacaucauGGGCcugcagcgugGCgCGAGa -3'
miRNA:   3'- -CGGCG-UGGgCGGCGGU-----------UCCG----------CG-GCUC- -5'
18958 3' -64.2 NC_004683.1 + 46625 0.66 0.291017
Target:  5'- cGCCGCGCCCGUCGaUCA----GCCGAc -3'
miRNA:   3'- -CGGCGUGGGCGGC-GGUuccgCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 53641 0.66 0.291017
Target:  5'- cGCCGCGaccuggCCGCgGCUGAGGCuGCacucacaGAGg -3'
miRNA:   3'- -CGGCGUg-----GGCGgCGGUUCCG-CGg------CUC- -5'
18958 3' -64.2 NC_004683.1 + 45844 0.66 0.291017
Target:  5'- aUCGCACCCGuacucgaaCCGCCA--GCGCCa-- -3'
miRNA:   3'- cGGCGUGGGC--------GGCGGUucCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 4971 0.66 0.291017
Target:  5'- gGCCGguUCC-UCG-CAGGGCGCCGuGg -3'
miRNA:   3'- -CGGCguGGGcGGCgGUUCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 23720 0.66 0.291017
Target:  5'- gGCgGCACCgGCgGCgGcaccaccccGGCGCCGAc -3'
miRNA:   3'- -CGgCGUGGgCGgCGgUu--------CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25282 0.66 0.291017
Target:  5'- gGCCGCG-CUGCCggGCCugcAGGCGCacagCGAGu -3'
miRNA:   3'- -CGGCGUgGGCGG--CGGu--UCCGCG----GCUC- -5'
18958 3' -64.2 NC_004683.1 + 30787 0.66 0.291017
Target:  5'- gGCUGCGCaCGCCGCCcGGaaCGCCGu- -3'
miRNA:   3'- -CGGCGUGgGCGGCGGuUCc-GCGGCuc -5'
18958 3' -64.2 NC_004683.1 + 31525 0.66 0.284225
Target:  5'- gGCCGUuuugggugaCCGCCGCCGccguGGgGuuGAGc -3'
miRNA:   3'- -CGGCGug-------GGCGGCGGUu---CCgCggCUC- -5'
18958 3' -64.2 NC_004683.1 + 55171 0.66 0.284225
Target:  5'- aGCCGCAUaCGUCGCCGuagcggaacgAGGUgagGCCGGc -3'
miRNA:   3'- -CGGCGUGgGCGGCGGU----------UCCG---CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 53723 0.66 0.284225
Target:  5'- aGCCuCAgCCGCgGCCAGGucGCGgCGGGc -3'
miRNA:   3'- -CGGcGUgGGCGgCGGUUC--CGCgGCUC- -5'
18958 3' -64.2 NC_004683.1 + 7313 0.66 0.284225
Target:  5'- aCCGCGCCCccaaCCGCgGcGGUGCUGGc -3'
miRNA:   3'- cGGCGUGGGc---GGCGgUuCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25125 0.66 0.284225
Target:  5'- uGCCGguCCUgGCCGCCGucaccGGUGCgGGu -3'
miRNA:   3'- -CGGCguGGG-CGGCGGUu----CCGCGgCUc -5'
18958 3' -64.2 NC_004683.1 + 27211 0.66 0.284225
Target:  5'- uGCCGCGCUgGCgCGUCucgauGcCGCCGAGc -3'
miRNA:   3'- -CGGCGUGGgCG-GCGGuu---CcGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 46437 0.66 0.284225
Target:  5'- uGCCGCaACCaggucuuggaGCCGCUGuuccguccGGcCGCCGAGa -3'
miRNA:   3'- -CGGCG-UGGg---------CGGCGGUu-------CC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 38498 0.67 0.277559
Target:  5'- uGCuCGCugCCuaCGCCGacgccuuggGGGUGCCGcAGu -3'
miRNA:   3'- -CG-GCGugGGcgGCGGU---------UCCGCGGC-UC- -5'
18958 3' -64.2 NC_004683.1 + 33041 0.67 0.277559
Target:  5'- uGCCGCACUCGUCGaCCGgaucgAGGCcaauccaacGCCGc- -3'
miRNA:   3'- -CGGCGUGGGCGGC-GGU-----UCCG---------CGGCuc -5'
18958 3' -64.2 NC_004683.1 + 23179 0.67 0.277559
Target:  5'- aCCGaC-CCCGCCaCCAguAGGUGCgCGGGg -3'
miRNA:   3'- cGGC-GuGGGCGGcGGU--UCCGCG-GCUC- -5'
18958 3' -64.2 NC_004683.1 + 37075 0.67 0.277559
Target:  5'- --aGCGCUCGacgauuuaCGCCGAGaCGCCGAGu -3'
miRNA:   3'- cggCGUGGGCg-------GCGGUUCcGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.