miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 5' -57.1 NC_004683.1 + 51020 1.07 0.001048
Target:  5'- gGGCUGGAUGCCCGACGACGAGACGAUc -3'
miRNA:   3'- -CCGACCUACGGGCUGCUGCUCUGCUA- -5'
18958 5' -57.1 NC_004683.1 + 49260 0.76 0.178233
Target:  5'- cGGCuugUGGAcgcUGCCCGACGACGucGCGGc -3'
miRNA:   3'- -CCG---ACCU---ACGGGCUGCUGCucUGCUa -5'
18958 5' -57.1 NC_004683.1 + 18264 0.76 0.183031
Target:  5'- cGGC--GAUGUCCGGCGACGAGcCGGUg -3'
miRNA:   3'- -CCGacCUACGGGCUGCUGCUCuGCUA- -5'
18958 5' -57.1 NC_004683.1 + 45611 0.73 0.256385
Target:  5'- gGGgUGG-UGCCCGACGACGAcacCGAg -3'
miRNA:   3'- -CCgACCuACGGGCUGCUGCUcu-GCUa -5'
18958 5' -57.1 NC_004683.1 + 32572 0.72 0.290453
Target:  5'- cGGCUGcacGAUGCCCGGCauacguGCGGGACGc- -3'
miRNA:   3'- -CCGAC---CUACGGGCUGc-----UGCUCUGCua -5'
18958 5' -57.1 NC_004683.1 + 6978 0.72 0.305043
Target:  5'- cGGCcGGcgGCCCaGACGuCGAGAcCGAg -3'
miRNA:   3'- -CCGaCCuaCGGG-CUGCuGCUCU-GCUa -5'
18958 5' -57.1 NC_004683.1 + 5965 0.71 0.368953
Target:  5'- uGCUGGGccgGCCgGugGgugagGCGAGGCGAUg -3'
miRNA:   3'- cCGACCUa--CGGgCugC-----UGCUCUGCUA- -5'
18958 5' -57.1 NC_004683.1 + 8470 0.7 0.395173
Target:  5'- gGGCUGGAUcgcgGCCCG-CG-CGGGGcCGAUc -3'
miRNA:   3'- -CCGACCUA----CGGGCuGCuGCUCU-GCUA- -5'
18958 5' -57.1 NC_004683.1 + 52044 0.7 0.416074
Target:  5'- aGGCUGGGaaccgUGCCCGACGcgcccugGCugaucgucgacgcggGAGGCGAc -3'
miRNA:   3'- -CCGACCU-----ACGGGCUGC-------UG---------------CUCUGCUa -5'
18958 5' -57.1 NC_004683.1 + 8949 0.7 0.422568
Target:  5'- cGCUGGuggagcUGCCCGGCGAgGccGACGGa -3'
miRNA:   3'- cCGACCu-----ACGGGCUGCUgCu-CUGCUa -5'
18958 5' -57.1 NC_004683.1 + 42609 0.7 0.422568
Target:  5'- cGGCUGGgGUGgUCGGCGAcCGcGACGAc -3'
miRNA:   3'- -CCGACC-UACgGGCUGCU-GCuCUGCUa -5'
18958 5' -57.1 NC_004683.1 + 26816 0.69 0.440497
Target:  5'- cGCUGGcggGCCaccucgaaagccuCGACGAUGAGAUGGUu -3'
miRNA:   3'- cCGACCua-CGG-------------GCUGCUGCUCUGCUA- -5'
18958 5' -57.1 NC_004683.1 + 4793 0.69 0.451073
Target:  5'- aGCUGGAcaaGCCCacgGACGAgGAGaACGAg -3'
miRNA:   3'- cCGACCUa--CGGG---CUGCUgCUC-UGCUa -5'
18958 5' -57.1 NC_004683.1 + 23396 0.68 0.490651
Target:  5'- cGGCUcgGGAUGCCgCGcuGCaGCGGGAUGAc -3'
miRNA:   3'- -CCGA--CCUACGG-GC--UGcUGCUCUGCUa -5'
18958 5' -57.1 NC_004683.1 + 14003 0.68 0.521362
Target:  5'- cGCUGug-GUCCuACGACGGGGCGAa -3'
miRNA:   3'- cCGACcuaCGGGcUGCUGCUCUGCUa -5'
18958 5' -57.1 NC_004683.1 + 5828 0.67 0.552793
Target:  5'- cGGCgGcGGUGCCCG-CGagcGCGGuGACGAUg -3'
miRNA:   3'- -CCGaC-CUACGGGCuGC---UGCU-CUGCUA- -5'
18958 5' -57.1 NC_004683.1 + 39259 0.67 0.562337
Target:  5'- cGGCguUGGAgugUGCCUcggccuuGGCGACGAG-CGGUg -3'
miRNA:   3'- -CCG--ACCU---ACGGG-------CUGCUGCUCuGCUA- -5'
18958 5' -57.1 NC_004683.1 + 39875 0.67 0.574061
Target:  5'- cGCUGGcuccgGCCaGACGAuuCGAGAUGAa -3'
miRNA:   3'- cCGACCua---CGGgCUGCU--GCUCUGCUa -5'
18958 5' -57.1 NC_004683.1 + 45692 0.67 0.574061
Target:  5'- uGGCUGGugcUGCacuacCCGACuACGgAGGCGAUg -3'
miRNA:   3'- -CCGACCu--ACG-----GGCUGcUGC-UCUGCUA- -5'
18958 5' -57.1 NC_004683.1 + 13114 0.67 0.595513
Target:  5'- cGGC-GGcUGCCCGGaggggcauCGGCGGGACcGGUg -3'
miRNA:   3'- -CCGaCCuACGGGCU--------GCUGCUCUG-CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.