Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18958 | 5' | -57.1 | NC_004683.1 | + | 8470 | 0.7 | 0.395173 |
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Target: 5'- gGGCUGGAUcgcgGCCCG-CG-CGGGGcCGAUc -3' miRNA: 3'- -CCGACCUA----CGGGCuGCuGCUCU-GCUA- -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 5965 | 0.71 | 0.368953 |
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Target: 5'- uGCUGGGccgGCCgGugGgugagGCGAGGCGAUg -3' miRNA: 3'- cCGACCUa--CGGgCugC-----UGCUCUGCUA- -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 6978 | 0.72 | 0.305043 |
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Target: 5'- cGGCcGGcgGCCCaGACGuCGAGAcCGAg -3' miRNA: 3'- -CCGaCCuaCGGG-CUGCuGCUCU-GCUa -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 32572 | 0.72 | 0.290453 |
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Target: 5'- cGGCUGcacGAUGCCCGGCauacguGCGGGACGc- -3' miRNA: 3'- -CCGAC---CUACGGGCUGc-----UGCUCUGCua -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 45611 | 0.73 | 0.256385 |
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Target: 5'- gGGgUGG-UGCCCGACGACGAcacCGAg -3' miRNA: 3'- -CCgACCuACGGGCUGCUGCUcu-GCUa -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 18264 | 0.76 | 0.183031 |
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Target: 5'- cGGC--GAUGUCCGGCGACGAGcCGGUg -3' miRNA: 3'- -CCGacCUACGGGCUGCUGCUCuGCUA- -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 49260 | 0.76 | 0.178233 |
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Target: 5'- cGGCuugUGGAcgcUGCCCGACGACGucGCGGc -3' miRNA: 3'- -CCG---ACCU---ACGGGCUGCUGCucUGCUa -5' |
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| 18958 | 5' | -57.1 | NC_004683.1 | + | 51020 | 1.07 | 0.001048 |
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Target: 5'- gGGCUGGAUGCCCGACGACGAGACGAUc -3' miRNA: 3'- -CCGACCUACGGGCUGCUGCUCUGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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