miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 3' -55.4 NC_004683.1 + 56255 0.68 0.579315
Target:  5'- uGCGGGugGG-CGcGGUGGCCAgcgcgGCGu -3'
miRNA:   3'- gCGCUUugCCaGCuCCGCUGGUa----CGU- -5'
18959 3' -55.4 NC_004683.1 + 21544 0.68 0.579315
Target:  5'- aGCGggGCGuGU-GAGGCGAaaCC-UGCGg -3'
miRNA:   3'- gCGCuuUGC-CAgCUCCGCU--GGuACGU- -5'
18959 3' -55.4 NC_004683.1 + 54343 0.69 0.568525
Target:  5'- aCGCGggGCGGUUc-GGUGGgCAUGUu -3'
miRNA:   3'- -GCGCuuUGCCAGcuCCGCUgGUACGu -5'
18959 3' -55.4 NC_004683.1 + 47164 0.69 0.525948
Target:  5'- uGCGGAACaGGacauccUCGAcgucgaucgucgGGUGGCCGUGCAg -3'
miRNA:   3'- gCGCUUUG-CC------AGCU------------CCGCUGGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 13340 0.7 0.505107
Target:  5'- cCGCu--GCGGUCGAcGGCGACgCcgAUGCGg -3'
miRNA:   3'- -GCGcuuUGCCAGCU-CCGCUG-G--UACGU- -5'
18959 3' -55.4 NC_004683.1 + 53185 0.7 0.505107
Target:  5'- aCGaCGAacgccccggccGAUGGcUCGGGGCGuuuCCGUGCAc -3'
miRNA:   3'- -GC-GCU-----------UUGCC-AGCUCCGCu--GGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 24132 0.7 0.505107
Target:  5'- cCGCGGcaaguACGucGUCGAGGCGAUCGccgaccUGCAc -3'
miRNA:   3'- -GCGCUu----UGC--CAGCUCCGCUGGU------ACGU- -5'
18959 3' -55.4 NC_004683.1 + 8033 0.7 0.505107
Target:  5'- uGCGcaccGCGGUCGAGcGCGACaucgAUGCc -3'
miRNA:   3'- gCGCuu--UGCCAGCUC-CGCUGg---UACGu -5'
18959 3' -55.4 NC_004683.1 + 545 0.7 0.47454
Target:  5'- aGCGAGaccuACGGcccCGAGGUGGCCgaccuGUGCGa -3'
miRNA:   3'- gCGCUU----UGCCa--GCUCCGCUGG-----UACGU- -5'
18959 3' -55.4 NC_004683.1 + 43785 0.7 0.473536
Target:  5'- gCGCGAuGCGGUCGGGGU--CCAuacccuugggcacUGCAc -3'
miRNA:   3'- -GCGCUuUGCCAGCUCCGcuGGU-------------ACGU- -5'
18959 3' -55.4 NC_004683.1 + 31649 0.7 0.464557
Target:  5'- uGCGGcccuGAUGGUCGGGuaucacgccuGCGAgCAUGCAg -3'
miRNA:   3'- gCGCU----UUGCCAGCUC----------CGCUgGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 40708 0.71 0.454684
Target:  5'- aGUGc-GCGGUUGAGGCGAucgacgaugcUCAUGCGa -3'
miRNA:   3'- gCGCuuUGCCAGCUCCGCU----------GGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 24787 0.71 0.453703
Target:  5'- gGCGuuGCGGUCGcGGCGgcgcgcgGCCAUGg- -3'
miRNA:   3'- gCGCuuUGCCAGCuCCGC-------UGGUACgu -5'
18959 3' -55.4 NC_004683.1 + 45477 0.71 0.435287
Target:  5'- cCGCuGGuuGGCGGUCaGGGGUGGCCGUGa- -3'
miRNA:   3'- -GCG-CU--UUGCCAG-CUCCGCUGGUACgu -5'
18959 3' -55.4 NC_004683.1 + 5475 0.72 0.397977
Target:  5'- gGCGAuguguggcacGGCGuGUCcucGGCGGCCGUGCAg -3'
miRNA:   3'- gCGCU----------UUGC-CAGcu-CCGCUGGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 44101 0.72 0.388975
Target:  5'- aCGCGAuc--GUCGAGGUGACCG-GCGc -3'
miRNA:   3'- -GCGCUuugcCAGCUCCGCUGGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 10938 0.72 0.380107
Target:  5'- aCGCGAAugGGccUCGAugGcGCGACCAUGa- -3'
miRNA:   3'- -GCGCUUugCC--AGCU--C-CGCUGGUACgu -5'
18959 3' -55.4 NC_004683.1 + 52519 0.72 0.371376
Target:  5'- gGCGAucGCGGccgaCGAGGCGGCCAaggaaUGCc -3'
miRNA:   3'- gCGCUu-UGCCa---GCUCCGCUGGU-----ACGu -5'
18959 3' -55.4 NC_004683.1 + 26235 0.73 0.33784
Target:  5'- aCGCGAAGaGGUCGAGcGCGACaaucUGCu -3'
miRNA:   3'- -GCGCUUUgCCAGCUC-CGCUGgu--ACGu -5'
18959 3' -55.4 NC_004683.1 + 56649 0.74 0.284591
Target:  5'- gCGCGAAcagguccggcccAUGGUCGAGGCGGgCAagGCGc -3'
miRNA:   3'- -GCGCUU------------UGCCAGCUCCGCUgGUa-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.