miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 5' -59.5 NC_004683.1 + 56216 0.67 0.467385
Target:  5'- --cGGCCGCCAguaUCCcCGACGcUgGCa -3'
miRNA:   3'- cuaCCGGCGGU---AGGaGCUGCuGgCGc -5'
18959 5' -59.5 NC_004683.1 + 39625 0.67 0.467385
Target:  5'- gGGUGGgCGCCG-CCggggUGGCGACC-CGa -3'
miRNA:   3'- -CUACCgGCGGUaGGa---GCUGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 3801 0.67 0.457745
Target:  5'- --aGGCCGucguuuggcucaCCGUCCUCGcCGGCauCGCGc -3'
miRNA:   3'- cuaCCGGC------------GGUAGGAGCuGCUG--GCGC- -5'
18959 5' -59.5 NC_004683.1 + 40587 0.67 0.457745
Target:  5'- cGAUGGCgGCUGUCCUggcacUGGCGGuguUCGCa -3'
miRNA:   3'- -CUACCGgCGGUAGGA-----GCUGCU---GGCGc -5'
18959 5' -59.5 NC_004683.1 + 2756 0.67 0.457745
Target:  5'- --cGGCCGCggCGagCUCGGCGGCgGCc -3'
miRNA:   3'- cuaCCGGCG--GUagGAGCUGCUGgCGc -5'
18959 5' -59.5 NC_004683.1 + 13082 0.67 0.452012
Target:  5'- cGGUGGCaCGCCAUUcaacugggguagugaCgCGGCGGCUGCc -3'
miRNA:   3'- -CUACCG-GCGGUAG---------------GaGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 12835 0.67 0.448212
Target:  5'- -cUGGCCaaCGUCC-CGGCaGGCCGCu -3'
miRNA:   3'- cuACCGGcgGUAGGaGCUG-CUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 45669 0.67 0.429484
Target:  5'- --cGGCCGCCggCacaUCGGCG-CUGUGg -3'
miRNA:   3'- cuaCCGGCGGuaGg--AGCUGCuGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 24509 0.67 0.429484
Target:  5'- cGGUGGCCGgcggcuugguCCcgCCguagcCGACGAUCGCc -3'
miRNA:   3'- -CUACCGGC----------GGuaGGa----GCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 976 0.68 0.419381
Target:  5'- uGGUGGCCGUggcuugaccggcaCAaggugaUCCUCGACGAgggguUCGCGc -3'
miRNA:   3'- -CUACCGGCG-------------GU------AGGAGCUGCU-----GGCGC- -5'
18959 5' -59.5 NC_004683.1 + 32955 0.68 0.411224
Target:  5'- -uUGGCCuCgAUCCggUCGACGAgUGCGg -3'
miRNA:   3'- cuACCGGcGgUAGG--AGCUGCUgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 12697 0.68 0.411224
Target:  5'- gGcgGGCaCGgCAUCCUCGGCauccucGGCgCGCGg -3'
miRNA:   3'- -CuaCCG-GCgGUAGGAGCUG------CUG-GCGC- -5'
18959 5' -59.5 NC_004683.1 + 51220 0.68 0.411224
Target:  5'- cGUGGCCGuCCAgucggCCUugcggcccuucgCGcCGGCCGCGc -3'
miRNA:   3'- cUACCGGC-GGUa----GGA------------GCuGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 10059 0.68 0.408526
Target:  5'- --cGGCCGCgGcggcgacuggucgaUCCUCaagaaGAUGACCGCa -3'
miRNA:   3'- cuaCCGGCGgU--------------AGGAG-----CUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 34929 0.68 0.402276
Target:  5'- -cUGGCaggGUCAUCCguugCGACGGCCuCGg -3'
miRNA:   3'- cuACCGg--CGGUAGGa---GCUGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 5393 0.68 0.384756
Target:  5'- uGAUGGCgCGCUucUCCUCuucgguGAgGAUCGCGg -3'
miRNA:   3'- -CUACCG-GCGGu-AGGAG------CUgCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 19493 0.68 0.384756
Target:  5'- -cUGGCCG-CGUCUUCGGacguuccccagcCGAUCGCGa -3'
miRNA:   3'- cuACCGGCgGUAGGAGCU------------GCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 24190 0.68 0.376188
Target:  5'- --cGGCUGCCGUCgUCGACcuuGCCGa- -3'
miRNA:   3'- cuaCCGGCGGUAGgAGCUGc--UGGCgc -5'
18959 5' -59.5 NC_004683.1 + 19735 0.69 0.367749
Target:  5'- --cGGCgGCgucguugaaccCGUCCUCGgcGCGAUCGCGg -3'
miRNA:   3'- cuaCCGgCG-----------GUAGGAGC--UGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 33326 0.69 0.367749
Target:  5'- -cUGGCCGCgGaUCUgGGCGAgCGCGu -3'
miRNA:   3'- cuACCGGCGgUaGGAgCUGCUgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.