miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1896 3' -59.1 NC_001347.2 + 197046 0.65 0.877613
Target:  5'- cGCaCGCGGCUGCCGcaguucagcucGGcgcucucgGACGCCGa -3'
miRNA:   3'- cUG-GCGCCGACGGCaa---------CCa-------CUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 37057 0.66 0.872068
Target:  5'- cGGCCGCGGaggUGCUGgcGGccGugGCCu -3'
miRNA:   3'- -CUGGCGCCg--ACGGCaaCCa-CugUGGu -5'
1896 3' -59.1 NC_001347.2 + 175653 0.66 0.864958
Target:  5'- uGGCCGUGGUguucaCCG-UGGUGAUuaACCGg -3'
miRNA:   3'- -CUGGCGCCGac---GGCaACCACUG--UGGU- -5'
1896 3' -59.1 NC_001347.2 + 78372 0.66 0.857657
Target:  5'- gGACCcgGCGGC-GCCGUggUGGgagGAC-CCGc -3'
miRNA:   3'- -CUGG--CGCCGaCGGCA--ACCa--CUGuGGU- -5'
1896 3' -59.1 NC_001347.2 + 136195 0.66 0.857657
Target:  5'- uGCCGCGGaCUgcGCCGggGGgcggcgGGCACg- -3'
miRNA:   3'- cUGGCGCC-GA--CGGCaaCCa-----CUGUGgu -5'
1896 3' -59.1 NC_001347.2 + 31416 0.66 0.850168
Target:  5'- cGGCCuG-GGCUGCUGUUGGguaACGCUg -3'
miRNA:   3'- -CUGG-CgCCGACGGCAACCac-UGUGGu -5'
1896 3' -59.1 NC_001347.2 + 187973 0.66 0.850168
Target:  5'- uGGgCGCGcGCUcGCCGUcguUGGaguuugacgaUGACGCCAa -3'
miRNA:   3'- -CUgGCGC-CGA-CGGCA---ACC----------ACUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 197544 0.66 0.850168
Target:  5'- gGACCGCaGCgugGCCGgc-GUGGCgGCCGa -3'
miRNA:   3'- -CUGGCGcCGa--CGGCaacCACUG-UGGU- -5'
1896 3' -59.1 NC_001347.2 + 124348 0.67 0.833858
Target:  5'- uACCGCGGCcGgCGUgacGGUGgucaacacuucgcACACCAc -3'
miRNA:   3'- cUGGCGCCGaCgGCAa--CCAC-------------UGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 191793 0.67 0.81846
Target:  5'- aGCCGCaGGCgcucUGCCaGUUGGcgaggGAUACCGu -3'
miRNA:   3'- cUGGCG-CCG----ACGG-CAACCa----CUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 1731 0.67 0.801647
Target:  5'- cGCCgGCGGUggGCCGgcacgacGGUGGCGCUg -3'
miRNA:   3'- cUGG-CGCCGa-CGGCaa-----CCACUGUGGu -5'
1896 3' -59.1 NC_001347.2 + 96197 0.67 0.801647
Target:  5'- cGGgCGUGGCgGCCGUaGGcgccuaccGACACCAg -3'
miRNA:   3'- -CUgGCGCCGaCGGCAaCCa-------CUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 63115 0.67 0.793026
Target:  5'- cGCCGCGGCcGCCGc---UGugGCCGg -3'
miRNA:   3'- cUGGCGCCGaCGGCaaccACugUGGU- -5'
1896 3' -59.1 NC_001347.2 + 190145 0.68 0.757287
Target:  5'- gGGCCGCaaccgGGUucUGCCGgcaUGGggGGCGCCAa -3'
miRNA:   3'- -CUGGCG-----CCG--ACGGCa--ACCa-CUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 39521 0.68 0.757287
Target:  5'- gGGgCGCGGCgacaUGCCGUugcgcUGGgccaugGGCGCCGg -3'
miRNA:   3'- -CUgGCGCCG----ACGGCA-----ACCa-----CUGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 15597 0.68 0.757287
Target:  5'- -cCCGCGGCUGCauugccUGGUGACGa-- -3'
miRNA:   3'- cuGGCGCCGACGgca---ACCACUGUggu -5'
1896 3' -59.1 NC_001347.2 + 147884 0.68 0.755453
Target:  5'- aGGCCGuUGGCguagccauugggGCCGUgGGUGGCGCg- -3'
miRNA:   3'- -CUGGC-GCCGa-----------CGGCAaCCACUGUGgu -5'
1896 3' -59.1 NC_001347.2 + 214715 0.68 0.748078
Target:  5'- cAUCGCGacgccccaGCUGCCGUaGGUGaAUGCCAa -3'
miRNA:   3'- cUGGCGC--------CGACGGCAaCCAC-UGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 24342 0.68 0.748078
Target:  5'- cGGCCGUGGUgGCCGUgcugggcugGGUG-CAUCGc -3'
miRNA:   3'- -CUGGCGCCGaCGGCAa--------CCACuGUGGU- -5'
1896 3' -59.1 NC_001347.2 + 197781 0.69 0.700796
Target:  5'- aGCCGCGuGCUGCuaCGUcaccGuGUGACGCCGg -3'
miRNA:   3'- cUGGCGC-CGACG--GCAa---C-CACUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.