miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1896 5' -51.6 NC_001347.2 + 37276 0.66 0.998115
Target:  5'- aGGUGGgccGgGGCCcguuuugcauaAGCGCGGa -3'
miRNA:   3'- -CCACCauaUgCCGGuuuag------UCGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 41178 0.66 0.998082
Target:  5'- cGGUGGcg-ACugGGCCGA--CAGCGCa- -3'
miRNA:   3'- -CCACCauaUG--CCGGUUuaGUCGCGcc -5'
1896 5' -51.6 NC_001347.2 + 189951 0.66 0.998082
Target:  5'- cGUcGUcUACGGCCAAAagCAGCGUa- -3'
miRNA:   3'- cCAcCAuAUGCCGGUUUa-GUCGCGcc -5'
1896 5' -51.6 NC_001347.2 + 10802 0.66 0.998082
Target:  5'- cGGUuguacGUGUAC-GCCA--UCAGCGCGa -3'
miRNA:   3'- -CCAc----CAUAUGcCGGUuuAGUCGCGCc -5'
1896 5' -51.6 NC_001347.2 + 200202 0.66 0.998049
Target:  5'- cGUGGUGUGCgacgGGCCcccGGGcucgcccacugacUCGGCGCGu -3'
miRNA:   3'- cCACCAUAUG----CCGG---UUU-------------AGUCGCGCc -5'
1896 5' -51.6 NC_001347.2 + 166745 0.66 0.997946
Target:  5'- cGGUGGUGUACaGGUUAugcgcuacggAGCGCGc -3'
miRNA:   3'- -CCACCAUAUG-CCGGUuuag------UCGCGCc -5'
1896 5' -51.6 NC_001347.2 + 76746 0.66 0.997316
Target:  5'- uGGUGGUcuccucGUGCGGCUcgcaCA-CGCGGu -3'
miRNA:   3'- -CCACCA------UAUGCCGGuuuaGUcGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 144579 0.66 0.996846
Target:  5'- cGGUGGcg-GCGGCCGGG-Cu-CGUGGa -3'
miRNA:   3'- -CCACCauaUGCCGGUUUaGucGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 66791 0.66 0.996846
Target:  5'- cGGUGGUG-GCGGCgg---CGGCaGUGGa -3'
miRNA:   3'- -CCACCAUaUGCCGguuuaGUCG-CGCC- -5'
1896 5' -51.6 NC_001347.2 + 1603 0.66 0.996692
Target:  5'- aGGUGGU--GCGGCUguaccgcugcaaccGGcUgGGCGUGGg -3'
miRNA:   3'- -CCACCAuaUGCCGG--------------UUuAgUCGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 89092 0.67 0.99631
Target:  5'- --aGGUGUGCGGCCAcg-CAcUGCGu -3'
miRNA:   3'- ccaCCAUAUGCCGGUuuaGUcGCGCc -5'
1896 5' -51.6 NC_001347.2 + 47122 0.67 0.996136
Target:  5'- -aUGGUAUgggcggcggcggcaAUGGCCGcggCAGCGgGGa -3'
miRNA:   3'- ccACCAUA--------------UGCCGGUuuaGUCGCgCC- -5'
1896 5' -51.6 NC_001347.2 + 157799 0.67 0.996136
Target:  5'- aGUGGUGUcaccaacggcagccGCGGUCGccgCAGuUGCGGg -3'
miRNA:   3'- cCACCAUA--------------UGCCGGUuuaGUC-GCGCC- -5'
1896 5' -51.6 NC_001347.2 + 172138 0.67 0.995014
Target:  5'- aGGUGGcgcaucUGUGgGGCguGacgccGUCAGUGUGGg -3'
miRNA:   3'- -CCACC------AUAUgCCGguU-----UAGUCGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 183452 0.67 0.995014
Target:  5'- aGGUGGUGa--GGCgCGGAU-AGCGCGc -3'
miRNA:   3'- -CCACCAUaugCCG-GUUUAgUCGCGCc -5'
1896 5' -51.6 NC_001347.2 + 202757 0.67 0.99424
Target:  5'- gGGUGGUAuUACuaCCA--UCAGCGCuGGu -3'
miRNA:   3'- -CCACCAU-AUGccGGUuuAGUCGCG-CC- -5'
1896 5' -51.6 NC_001347.2 + 159455 0.67 0.994074
Target:  5'- --cGGcc-GCGGCCGcucgaugacgauGUCGGCGCGGc -3'
miRNA:   3'- ccaCCauaUGCCGGUu-----------UAGUCGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 1941 0.67 0.993371
Target:  5'- cGGUGGcUGggcugcGCGGCgGGGcCGGCGaCGGg -3'
miRNA:   3'- -CCACC-AUa-----UGCCGgUUUaGUCGC-GCC- -5'
1896 5' -51.6 NC_001347.2 + 161118 0.67 0.993371
Target:  5'- cGUGGUgacgcgcgaagcAUaggcgacgcagGCGGUCGcgcauuAUCAGCGCGGg -3'
miRNA:   3'- cCACCA------------UA-----------UGCCGGUu-----UAGUCGCGCC- -5'
1896 5' -51.6 NC_001347.2 + 60713 0.68 0.992297
Target:  5'- cGUGGUAacgaugGCGGCCGcgauuggAAUCGG-GUGGu -3'
miRNA:   3'- cCACCAUa-----UGCCGGU-------UUAGUCgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.