Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18960 | 3' | -53.5 | NC_004683.1 | + | 51814 | 1.09 | 0.001526 |
Target: 5'- cCUCAACCGACAGGAGAUCCACCAGUGa -3' miRNA: 3'- -GAGUUGGCUGUCCUCUAGGUGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 26911 | 0.66 | 0.79846 |
Target: 5'- gUCGGCCGACAaGAuGAUCgCGUCGGUGa -3' miRNA: 3'- gAGUUGGCUGUcCU-CUAG-GUGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 26077 | 0.67 | 0.778595 |
Target: 5'- gUCGACCGAgCAGGcccaacagcAGGUgCGCgAGUGa -3' miRNA: 3'- gAGUUGGCU-GUCC---------UCUAgGUGgUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 19403 | 0.67 | 0.747665 |
Target: 5'- -gCGAUCGGCuGGGGAacgUCCgaagacgcgGCCAGUGg -3' miRNA: 3'- gaGUUGGCUGuCCUCU---AGG---------UGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 51290 | 0.68 | 0.726426 |
Target: 5'- aCUCAucGCCGAgCuGGAGggCCGCCGaUGa -3' miRNA: 3'- -GAGU--UGGCU-GuCCUCuaGGUGGUcAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 16605 | 0.68 | 0.671852 |
Target: 5'- gUCGACCuguGGCggccGGGGGAUCCgcagccagACCGGUGg -3' miRNA: 3'- gAGUUGG---CUG----UCCUCUAGG--------UGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 44902 | 0.7 | 0.605205 |
Target: 5'- -gUAACCGAUuGGAcggccggacGGUUCACCAGUGg -3' miRNA: 3'- gaGUUGGCUGuCCU---------CUAGGUGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 33713 | 0.72 | 0.445931 |
Target: 5'- aCUCcGCCGGgguUAGGGGAUCCacaGCCAGUc -3' miRNA: 3'- -GAGuUGGCU---GUCCUCUAGG---UGGUCAc -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 42557 | 0.69 | 0.649675 |
Target: 5'- uUCGAUCGuCAGGuucGAUCCACCAc-- -3' miRNA: 3'- gAGUUGGCuGUCCu--CUAGGUGGUcac -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 36933 | 0.66 | 0.786621 |
Target: 5'- cCUCGACCGACcaguguuuuacccucGGGAGugcCCugagcagcgcuacgaGCCGGUGa -3' miRNA: 3'- -GAGUUGGCUG---------------UCCUCua-GG---------------UGGUCAC- -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 26143 | 0.66 | 0.79846 |
Target: 5'- gCUCggUCGACAGGAcGAacgCgCGCCGGa- -3' miRNA: 3'- -GAGuuGGCUGUCCU-CUa--G-GUGGUCac -5' |
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18960 | 3' | -53.5 | NC_004683.1 | + | 16490 | 0.66 | 0.79846 |
Target: 5'- gCUCGAUCGcgguCAGGAucGAUCCgaACCAGg- -3' miRNA: 3'- -GAGUUGGCu---GUCCU--CUAGG--UGGUCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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