miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 51698 0.67 0.328362
Target:  5'- gGCuCGGgGGCgggcuUGAUCGCG-UCGAGCu -3'
miRNA:   3'- gCGuGCCgCCG-----GCUGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 15854 0.67 0.323878
Target:  5'- uGCACGGCaacaucGGCCaGGCCGCugaggccgcugagaaGCUCGcccgaauGCa -3'
miRNA:   3'- gCGUGCCG------CCGG-CUGGCG---------------CGAGCu------CG- -5'
18960 5' -63 NC_004683.1 + 10737 0.67 0.320915
Target:  5'- gGCGCGGCgGGCCaagacGCgGCGaaCGAGUu -3'
miRNA:   3'- gCGUGCCG-CCGGc----UGgCGCgaGCUCG- -5'
18960 5' -63 NC_004683.1 + 9199 0.67 0.320915
Target:  5'- aGUuCGGCGGCgGuGCCuCGCUuucCGAGCu -3'
miRNA:   3'- gCGuGCCGCCGgC-UGGcGCGA---GCUCG- -5'
18960 5' -63 NC_004683.1 + 18809 0.67 0.318705
Target:  5'- uGC-CGGCGGCguuguugauaaaugCGACgauCGCGCUCG-GUa -3'
miRNA:   3'- gCGuGCCGCCG--------------GCUG---GCGCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 6817 0.67 0.313595
Target:  5'- aGCAC-GCGGCCGcCCGgGCcgUCGAc- -3'
miRNA:   3'- gCGUGcCGCCGGCuGGCgCG--AGCUcg -5'
18960 5' -63 NC_004683.1 + 41045 0.67 0.313595
Target:  5'- gCGCGCGGCcaggucggcguGGCCGACgggcaacggcggCGCggucaGCUCG-GCg -3'
miRNA:   3'- -GCGUGCCG-----------CCGGCUG------------GCG-----CGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 13410 0.67 0.313595
Target:  5'- cCGCA-GGCGGCCccguUCGCGCUCa--- -3'
miRNA:   3'- -GCGUgCCGCCGGcu--GGCGCGAGcucg -5'
18960 5' -63 NC_004683.1 + 23066 0.67 0.313595
Target:  5'- uGCuCGGCGGCCuggugcucaccGG-CGCGCUCucguGGGCg -3'
miRNA:   3'- gCGuGCCGCCGG-----------CUgGCGCGAG----CUCG- -5'
18960 5' -63 NC_004683.1 + 18141 0.67 0.311424
Target:  5'- cCGCACgccguGGCGGCCGgaccccgaaGCCGCcgucacggucaccgGCUCGucGCc -3'
miRNA:   3'- -GCGUG-----CCGCCGGC---------UGGCG--------------CGAGCu-CG- -5'
18960 5' -63 NC_004683.1 + 41632 0.67 0.311424
Target:  5'- gCGCGCGGCGaacauggcacucucGCa-AUgGCGCUCGAGg -3'
miRNA:   3'- -GCGUGCCGC--------------CGgcUGgCGCGAGCUCg -5'
18960 5' -63 NC_004683.1 + 43821 0.67 0.306402
Target:  5'- uGC-CGGUGcGCugcugaccuCGGCCGCGCucggucUCGAGCc -3'
miRNA:   3'- gCGuGCCGC-CG---------GCUGGCGCG------AGCUCG- -5'
18960 5' -63 NC_004683.1 + 12038 0.67 0.306402
Target:  5'- gGCAgCGGCGGUa-GCCcCGCgCGGGCg -3'
miRNA:   3'- gCGU-GCCGCCGgcUGGcGCGaGCUCG- -5'
18960 5' -63 NC_004683.1 + 42391 0.67 0.299337
Target:  5'- uCGcCACGGCGGCagccACCuuGgGCUgGAGCu -3'
miRNA:   3'- -GC-GUGCCGCCGgc--UGG--CgCGAgCUCG- -5'
18960 5' -63 NC_004683.1 + 46462 0.67 0.299337
Target:  5'- gGCGCGGUagcGGCCccacggGGCC-CGCUCcGGCa -3'
miRNA:   3'- gCGUGCCG---CCGG------CUGGcGCGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 3745 0.67 0.299337
Target:  5'- cCGCacacucuccaGCGGCGGCCgGGCCGCacGCUU-AGUu -3'
miRNA:   3'- -GCG----------UGCCGCCGG-CUGGCG--CGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 56877 0.67 0.299337
Target:  5'- gGCAUGGUgaaGGCCcccGACCuGCGC-CGAuGCa -3'
miRNA:   3'- gCGUGCCG---CCGG---CUGG-CGCGaGCU-CG- -5'
18960 5' -63 NC_004683.1 + 42730 0.67 0.298637
Target:  5'- gGCAcacucauCGGCGGCCG-CCGaucuCGUcgCGGGCg -3'
miRNA:   3'- gCGU-------GCCGCCGGCuGGC----GCGa-GCUCG- -5'
18960 5' -63 NC_004683.1 + 7391 0.67 0.297939
Target:  5'- gCGCucgaccuggauuCGGCGGCCGGgCGCGCUg---- -3'
miRNA:   3'- -GCGu-----------GCCGCCGGCUgGCGCGAgcucg -5'
18960 5' -63 NC_004683.1 + 6727 0.68 0.292398
Target:  5'- aGCACGGC-GUCGAUgGCaGCcUGAGCc -3'
miRNA:   3'- gCGUGCCGcCGGCUGgCG-CGaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.